PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0202s0430.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 489aa    MW: 53735.8 Da    PI: 6.6425
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0202s0430.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.5e-1861105147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             r +WT eE++++++a k++G g W++I +++g ++t+ q++s+ qky
  SapurV1A.0202s0430.1.p  61 REKWTDEEHQRFLEALKLYGRG-WRKIQEHVG-TKTAVQIRSHAQKY 105
                             789*******************.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-1755109IPR009057Homeodomain-like
PROSITE profilePS5129422.16556110IPR017930Myb domain
TIGRFAMsTIGR015571.3E-1659108IPR006447Myb domain, plants
SMARTSM007177.4E-1460108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-1061107IPR009057Homeodomain-like
PfamPF002495.8E-1661105IPR001005SANT/Myb domain
CDDcd001671.04E-1163106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MAAASKEQME VTNLKSFGKA CDFDTNGCEQ SETDIQLKEM YSFGSDNVPK VRKPYTITKQ  60
REKWTDEEHQ RFLEALKLYG RGWRKIQEHV GTKTAVQIRS HAQKYFSKVV RESDGSNESS  120
LKPIEIPPPR PKRKPAHPYP RKPVDVLEGT GASGQLERSP SPNSSVSEKE NQSPISVLSA  180
LASDTLGSAL SEPPNACSSP TSCTTDMHSI SLSPSAKETE HGTSNSSGEE KGNLSLVQMF  240
STPRENFLSE VKKSELGSKN AVCAEHDAAK EASSTSIKLF GITVKIADSQ KESPPGAELV  300
LSVISNENHD NVDADREKPS HILQRKQSDA ELSLGMVNSN QNPCPSPASV IQCTELQGGN  360
ANYFATNSSI PWRAFCQGVP FLHLTSYDHT SPHKPTPCVE ERFEEKEILN ERSCSGSNSS  420
SVGDLENKER NLDVVDSQCR QPSVEGRSSI QKSVRGFVPY KRCLGEREMI STVIVSEERE  480
RQRARICS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0202s0430.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1484100.0EF148410.1 Populus trichocarpa x Populus deltoides clone WS01314_I10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317724.10.0protein REVEILLE 7
TrEMBLB9I4X50.0B9I4X5_POPTR; Uncharacterized protein
STRINGPOPTR_0012s03530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.12e-46MYB_related family protein