PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0206s0170.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 375aa    MW: 42745.8 Da    PI: 6.5796
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0206s0170.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix88.11e-2777158286
                trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             W ++e++ Li +rrem+  ++++k++k+lWe++s kmre+gf rsp++C++kw+nl k+ykk k++++++    s +++y+ +++
  SapurV1A.0206s0170.2.p  77 WVQDETRSLIGFRREMDGLFNTSKSNKHLWEQISTKMREKGFDRSPTMCTDKWRNLLKEYKKAKHQNRGG---GSAKMSYYMEID 158
                             ********************************************************************97...566789998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.28169133IPR017877Myb-like domain
CDDcd122031.77E-2975140No hitNo description
PfamPF138371.5E-2176160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MYSSEKPRPL DFYKEEIAPS SSRDNMIIEV ISSNGDLPPL HLHPTTAATN PHQMILGESS  60
GDDNHEVKAP KKRAETWVQD ETRSLIGFRR EMDGLFNTSK SNKHLWEQIS TKMREKGFDR  120
SPTMCTDKWR NLLKEYKKAK HQNRGGGSAK MSYYMEIDEI LRGRNKNSQY KCTVPSKVDP  180
YMQFTDKGFE DTSISFGPLE ASARPSVNLE RCLDHDGHPL AITAADAVAA SGVPPWNWRE  240
TPGNVAESQS YGGRVISVKS GDYTRRIGID GTADAIREAI KSAFRLRTKR AFWLEDEDQI  300
IRALDRDMPL GSYTLHLDED HLPVHTEEKI FYTEDDYRDF LSHRGWTCLR EFDGYRNIDS  360
MDDLRHGAIY RGVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A9e-5071156186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0206s0170.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312646.10.0trihelix transcription factor GT-1 isoform X1
SwissprotQ9FX531e-177TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLB9HLA70.0B9HLA7_POPTR; Trihelix family protein
STRINGPOPTR_0008s17980.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-179Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]