PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0206s0170.3.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Trihelix

Protein Properties

Length: 281aa MW: 32193.7 Da PI: 9.6417

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0206s0170.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.8	6.2e-28	77	158	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rrem+ ++++k++k+lWe++s kmre+gf rsp++C++kw+nl k+ykk k++++++ s +++y+ +++ SapurV1A.0206s0170.3.p 77 WVQDETRSLIGFRREMDGLFNTSKSNKHLWEQISTKMREKGFDRSPTMCTDKWRNLLKEYKKAKHQNRGG---GSAKMSYYMEID 158 ********************************************************************97...566789999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.6E-4	67	139	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.281	69	133	IPR017877	Myb-like domain
CDD	cd12203	2.29E-30	75	140	No hit	No description
Pfam	PF13837	9.0E-22	76	160	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MYSSEKPRPL DFYKEEIAPS SSRDNMIIEV ISSNGDLPPL HLHPTTAATN PHQMILGESS 60 GDDNHEVKAP KKRAETWVQD ETRSLIGFRR EMDGLFNTSK SNKHLWEQIS TKMREKGFDR 120 SPTMCTDKWR NLLKEYKKAK HQNRGGGSAK MSYYMEIDEI LRGRNKNSQY KCTVPSKVDP 180 YMQFTDKGFE DTSISFGPLE GIKIISYVIL LCINTTPLEL LRIGIRKVPS YSRYATRVSQ 240 GFFRSLLNHL PQISTYKTCN TTNKFFPLSA PHFFSLEVFT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-51	71	156	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0206s0170.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024463183.1	1e-159	trihelix transcription factor GT-1 isoform X4
Swissprot	Q9FX53	2e-79	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A1I9W0D2	1e-134	A0A1I9W0D2_POPTO; Homeodomain-like superfamily protein
TrEMBL	B9HLA7	1e-132	B9HLA7_POPTR; Trihelix family protein
STRING	POPTR_0008s17980.1	1e-133	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.3	5e-84	Trihelix family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0206s0170.3.p

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]