PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0206s0170.5.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Trihelix

Protein Properties

Length: 199aa MW: 22856.9 Da PI: 9.6106

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0206s0170.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89.8	3e-28	77	158	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rrem+ ++++k++k+lWe++s kmre+gf rsp++C++kw+nl k+ykk k++++++ s +++y+ +++ SapurV1A.0206s0170.5.p 77 WVQDETRSLIGFRREMDGLFNTSKSNKHLWEQISTKMREKGFDRSPTMCTDKWRNLLKEYKKAKHQNRGG---GSAKMSYYMEID 158 ********************************************************************97...566789999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-4	67	139	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.281	69	133	IPR017877	Myb-like domain
CDD	cd12203	1.30E-28	75	140	No hit	No description
Pfam	PF13837	4.2E-22	76	160	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MYSSEKPRPL DFYKEEIAPS SSRDNMIIEV ISSNGDLPPL HLHPTTAATN PHQMILGESS 60 GDDNHEVKAP KKRAETWVQD ETRSLIGFRR EMDGLFNTSK SNKHLWEQIS TKMREKGFDR 120 SPTMCTDKWR NLLKEYKKAK HQNRGGGSAK MSYYMEIDEI LRGRNKNSQY KCTVPSKVDP 180 YMQFTDKDVG YCSKKLSK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	3e-52	71	156	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0206s0170.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024463183.1	1e-127	trihelix transcription factor GT-1 isoform X4
Swissprot	Q9FX53	7e-72	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A1I9W0D2	1e-125	A0A1I9W0D2_POPTO; Homeodomain-like superfamily protein
TrEMBL	B9HLA7	1e-123	B9HLA7_POPTR; Trihelix family protein
STRING	POPTR_0008s17980.1	1e-124	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.3	2e-76	Trihelix family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0206s0170.5.p

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]