PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0206s0260.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 242aa    MW: 27500.9 Da    PI: 6.8492
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0206s0260.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.6e-131461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg W+ eEd++l + +   G ++W+ +++  g+ R++k+c++rw +yl
  SapurV1A.0206s0260.1.p 14 RGTWSVEEDQKLTNFILCNGIKCWRHVPKLAGLLRCGKSCRLRWMNYL 61
                            89******************************99************97 PP
2Myb_DNA-binding55.21.6e-1767110146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg++++ E+++lv+++ +lG++ W++Ia+ ++ gRt++++k++w++
  SapurV1A.0206s0260.1.p  67 RGAFSEAEEDQLVELHSRLGNR-WSKIAAFFP-GRTDNEIKNHWNT 110
                             89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-19564IPR009057Homeodomain-like
PROSITE profilePS5129412.886961IPR017930Myb domain
SuperFamilySSF466895.99E-2811108IPR009057Homeodomain-like
SMARTSM007174.5E-91363IPR001005SANT/Myb domain
PfamPF002494.3E-111461IPR001005SANT/Myb domain
CDDcd001671.08E-61661No hitNo description
PROSITE profilePS5129426.88262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-2665117IPR009057Homeodomain-like
SMARTSM007173.2E-1666114IPR001005SANT/Myb domain
PfamPF002495.1E-1667110IPR001005SANT/Myb domain
CDDcd001672.07E-1169110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRRPCCDKI GLKRGTWSVE EDQKLTNFIL CNGIKCWRHV PKLAGLLRCG KSCRLRWMNY  60
LRPDLKRGAF SEAEEDQLVE LHSRLGNRWS KIAAFFPGRT DNEIKNHWNT RIKKKLKLLG  120
LDPHGGEPPV EQGENRDAKE GGGDIDVDQK LAENPVSKVE TRLDHDHSCS DHNTRTKASR  180
EDSDAGWSTF PSLTDLQFDS CLSRSSMEKY VLQEGCSGSY WIDDYVDSLL SWDGINFNNL  240
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0206s0260.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311737.31e-148myb-related protein 315
SwissprotP813941e-65MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A2K1ZJ861e-146A0A2K1ZJ86_POPTR; Uncharacterized protein
TrEMBLA0A3N7FF861e-146A0A3N7FF86_POPTR; Uncharacterized protein
STRINGPOPTR_0008s18110.18e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2812333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.14e-73myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]