PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0207s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 174aa    MW: 20083.5 Da    PI: 8.4708
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0207s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.7e-172173456
                            -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                            + ++t++q++ Le+ F  n+++  e + +LA++lg++ rq+ +W+qN+Ra++k
  SapurV1A.0207s0080.1.p 21 KKRLTEDQVRLLERTFTTNKKLEPELKVQLANQLGVPPRQIAIWYQNKRARWK 73
                            5679************************************************9 PP
2HD-ZIP_I/II107.78.4e-3520109291
             HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                             +k+rl+++qv+lLE++F++++kLepe Kv+la++Lg+ prq+a+W+qn+RAR+kt+ lE dy++L+ ++++  ++++rLe+ev +L+
  SapurV1A.0207s0080.1.p  20 NKKRLTEDQVRLLERTFTTNKKLEPELKVQLANQLGVPPRQIAIWYQNKRARWKTQSLELDYNTLQVKLENALSDRRRLEREVVKLQ 106
                             79************************************************************************************* PP

             HD-ZIP_I/II  89 eel 91 
                             e+l
  SapurV1A.0207s0080.1.p 107 EDL 109
                             987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.9851575IPR001356Homeobox domain
SuperFamilySSF466892.18E-171684IPR009057Homeodomain-like
SMARTSM003891.5E-141779IPR001356Homeobox domain
CDDcd000861.33E-132176No hitNo description
Gene3DG3DSA:1.10.10.602.6E-182182IPR009057Homeodomain-like
PfamPF000466.9E-152173IPR001356Homeobox domain
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MDFSHSQTQQ KQHYSPKHNN KKRLTEDQVR LLERTFTTNK KLEPELKVQL ANQLGVPPRQ  60
IAIWYQNKRA RWKTQSLELD YNTLQVKLEN ALSDRRRLER EVVKLQEDLW RARQMVFTFS  120
QETTVQPTVN GSCNSSCDDR GSSSLHEDVN GDVLQLDELY ACLYGAGGGS TWV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0207s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1469371e-167EF146937.1 Populus trichocarpa clone WS01225_C08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008450.12e-99PREDICTED: homeobox-leucine zipper protein ATHB-52-like
SwissprotQ9FN292e-46ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBLA0A2K2CAW76e-98A0A2K2CAW7_POPTR; Uncharacterized protein
TrEMBLA9PF243e-98A9PF24_POPTR; Uncharacterized protein
STRINGPOPTR_0001s40540.15e-99(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.17e-49homeobox protein 52