PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0213s0310.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 344aa MW: 38131.9 Da PI: 5.1753

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0213s0310.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	68.1	2.5e-21	2	54	75	128
NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 nrat +gyWkatgkd+e+ + +++l +kktLvf++grap g++t+Wvmheyrl SapurV1A.0213s0310.2.p 2 NRATGKGYWKATGKDREIRR-QSQLLAMKKTLVFHSGRAPVGTRTNWVMHEYRL 54 8****************9.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	30.075	1	78	IPR003441	NAC domain
SuperFamily	SSF101941	1.07E-25	2	79	IPR003441	NAC domain
Pfam	PF02365	7.7E-10	2	54	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MNRATGKGYW KATGKDREIR RQSQLLAMKK TLVFHSGRAP VGTRTNWVMH EYRLIDEDLE 60 RTGAMQIDSY VLCRVFHKNN IGPPTGNRYA PFIEEEWDDC GAALIPGEDA AADEVVVTHD 120 TGGEMHRTEQ DSHSINKSPL GITEVPGDSQ NALPVCKTES VEDCPPLCVL NTEAPLPLLQ 180 YKRRKHNNDT GSIRSNASEN STRTSQDPCS STTTTAATTS AEMMMATTSA TTTAISALLE 240 FSLMEPLEPK ENPRAPPPAL DAASLDSSMS PSCRKFINDL QSEIHKISVE RETLKLEVMS 300 AHTMINILQS RIDFLNKENE DLKRIDFLNK ENEDLKRSVP SEI*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MNRATGKGYW KATGKDREIR RQSQLLAMKK TLVFHSGRAP VGTRTNWVMH EYRLIDEDLE  60
RTGAMQIDSY VLCRVFHKNN IGPPTGNRYA PFIEEEWDDC GAALIPGEDA AADEVVVTHD  120
TGGEMHRTEQ DSHSINKSPL GITEVPGDSQ NALPVCKTES VEDCPPLCVL NTEAPLPLLQ  180
YKRRKHNNDT GSIRSNASEN STRTSQDPCS STTTTAATTS AEMMMATTSA TTTAISALLE  240
FSLMEPLEPK ENPRAPPPAL DAASLDSSMS PSCRKFINDL QSEIHKISVE RETLKLEVMS  300
AHTMINILQS RIDFLNKENE DLKRIDFLNK ENEDLKRSVP SEI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-23	2	80	90	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-23	2	80	90	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-23	2	80	90	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-23	2	80	90	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-23	2	80	93	170	NAC domain-containing protein 19
3swm_B	2e-23	2	80	93	170	NAC domain-containing protein 19
3swm_C	2e-23	2	80	93	170	NAC domain-containing protein 19
3swm_D	2e-23	2	80	93	170	NAC domain-containing protein 19
3swp_A	2e-23	2	80	93	170	NAC domain-containing protein 19
3swp_B	2e-23	2	80	93	170	NAC domain-containing protein 19
3swp_C	2e-23	2	80	93	170	NAC domain-containing protein 19
3swp_D	2e-23	2	80	93	170	NAC domain-containing protein 19
4dul_A	2e-23	2	80	90	167	NAC domain-containing protein 19
4dul_B	2e-23	2	80	90	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269\|PubMed:24045019, ECO:0000269\|PubMed:25578968, ECO:0000269\|PubMed:26617990}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00612	ChIP-seq	Transfer from AT3G10490	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0213s0310.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF145394	0.0	EF145394.1 Populus trichocarpa clone WS01124_C05 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011024336.1	0.0	PREDICTED: NAC transcription factor NAM-A1
Swissprot	Q9SQX9	4e-96	NAC50_ARATH; NAC domain containing protein 50
TrEMBL	A9PB02	0.0	A9PB02_POPTR; Uncharacterized protein
STRING	POPTR_0010s23630.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.1	1e-92	NAC domain containing protein 50

Link Out ? help Back to Top
Phytozome	SapurV1A.0213s0310.2.p

Publications ? help Back to Top
Zhang S, et al. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov, 2019. [PMID:26617990]