PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0215s0070.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

LBD

Protein Properties

Length: 198aa MW: 21042 Da PI: 8.303

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0215s0070.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.5	2.9e-40	18	117	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +CaaCk+lrr+Ca++C+++pyf +p+kfa+vhk+FGasnv+kll ++pe++r da++slvyeA+ r+rdPvyG++g i++lqqq+ SapurV1A.0215s0070.2.p 18 PCAACKLLRRRCAEECPFSPYFSPLEPQKFAAVHKVFGASNVSKLLMEVPESQRADAANSLVYEANLRLRDPVYGSMGAISALQQQI 104 7************************************************************************************ PP DUF260 88 eqlkaelallkee 100 + l+ael+++++ SapurV1A.0215s0070.2.p 105 QLLQAELSATRAD 117 ******99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.378	17	118	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-40	18	115	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MGRRQMLGLP GILNTVTPCA ACKLLRRRCA EECPFSPYFS PLEPQKFAAV HKVFGASNVS 60 KLLMEVPESQ RADAANSLVY EANLRLRDPV YGSMGAISAL QQQIQLLQAE LSATRADILS 120 YKYREAAASN IISSTHAALV SSATISAPSQ TLAPPPPPPP PLSVVVSLSS SSPLYTPPTS 180 TSGYSTLSSE NNVPYFD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-43	18	125	11	118	LOB family transfactor Ramosa2.1
5ly0_B	5e-43	18	125	11	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0215s0070.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002319420.1	1e-106	LOB domain-containing protein 15 isoform X1
Swissprot	Q8L5T5	7e-67	LBD15_ARATH; LOB domain-containing protein 15
Swissprot	Q9AT61	7e-67	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	B9I6X0	1e-105	B9I6X0_POPTR; LBD family protein
STRING	POPTR_0013s15220.1	1e-106	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-62	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	SapurV1A.0215s0070.2.p

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288] Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]