PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0216s0030.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

TCP

Protein Properties

Length: 158aa MW: 17297.7 Da PI: 9.8905

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0216s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	93.9	3.1e-29	15	80	6	71
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssas 71 ++ +++ kv+gRdRR+Rl+++caar+F+L++eLG ++d++tieWLl+ a+p i++ tg+++ + s SapurV1A.0216s0030.1.p 15 RSRKDRRLKVNGRDRRIRLPMNCAARIFQLTRELGSKTDGETIEWLLRVAEPTIIAVTGNGAAATS 80 6789********************************************************554442 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.7E-25	16	82	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	22.526	17	71	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MNNKSTSKIK VDDPRSRKDR RLKVNGRDRR IRLPMNCAAR IFQLTRELGS KTDGETIEWL 60 LRVAEPTIIA VTGNGAAATS VNTTMVPQPP GLHPSAGSAG LSSSNIYACE ARSTEPIQAR 120 GLNIKDKNCE VPENDPLVFP PGFDYLGTNF NREYLLK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0216s0030.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002314294.3	2e-55	transcription factor TCP7
TrEMBL	A0A2K1Z0T1	5e-54	A0A2K1Z0T1_POPTR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-27	TCP family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0216s0030.1.p