PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0217s0100.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

YABBY

Protein Properties

Length: 193aa MW: 21143.9 Da PI: 8.1611

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0217s0100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	230	5.9e-71	2	159	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvek 88 +++ se vCyv+CnfCntilavsvPs+slf++vtvrCGhC +llsvn+ +sq+l+ ++ + ++ +l + ++ ++++ s + SapurV1A.0217s0100.1.p 2 SLDMVSEPVCYVHCNFCNTILAVSVPSSSLFNIVTVRCGHCGNLLSVNMGASSQTLPLQDP---QSQKLVLLNSEDLNKDFGSSSKC 85 567889**************************************************996...33333444444444444433222 PP YABBY 89 eesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +++ ++ e++e pr+pp irPPekrqrvPsaynrfik+eiqrika+nPdishreafs+aaknWahfP+ihfgl SapurV1A.0217s0100.1.p 86 N-------KVNASESTEHHEPPRMPP-IRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSTAAKNWAHFPHIHFGL 159 1.......122223456788999999.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.6E-73	6	159	IPR006780	YABBY protein
SuperFamily	SSF47095	6.81E-8	104	152	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.4E-4	108	151	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MSLDMVSEPV CYVHCNFCNT ILAVSVPSSS LFNIVTVRCG HCGNLLSVNM GASSQTLPLQ 60 DPQSQKLVLL NSEDLNKDFG SSSKCNKVNA SESTEHHEPP RMPPIRPPEK RQRVPSAYNR 120 FIKDEIQRIK AGNPDISHRE AFSTAAKNWA HFPHIHFGLK LDSNKHAKLD HPSIAGDGAQ 180 KTSGLYEING SL*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0217s0100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147402	0.0	EF147402.1 Populus trichocarpa clone WS01230_J05 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024453762.1	1e-129	axial regulator YABBY 5 isoform X3
Swissprot	Q9XFB0	7e-75	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A9PGB2	1e-128	A9PGB2_POPTR; Uncharacterized protein
STRING	POPTR_0001s22180.1	1e-109	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-67	YABBY family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0217s0100.1.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]