PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0222s0070.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

LBD

Protein Properties

Length: 226aa MW: 24439.7 Da PI: 8.5926

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0222s0070.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.3	3.4e-40	42	141	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk++Gasnv+kll ++pe++r d+++slvyeA+ r+rdPvyG++g i++lqqq+ SapurV1A.0222s0070.1.p 42 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVYGASNVSKLLMEVPESQRVDTANSLVYEANLRLRDPVYGSMGAISALQQQI 128 7************************************************************************************ PP DUF260 88 eqlkaelallkee 100 ++l+ael+++++e SapurV1A.0222s0070.1.p 129 QSLQAELSAIRAE 141 ******99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.774	41	142	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.9E-40	42	139	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MSRDRERFEE LGKRIKRESD ASSLMGRRQM LGPPVILNTV TPCAACKLLR RRCAEECPFS 60 PYFSPHEPQK FAAVHKVYGA SNVSKLLMEV PESQRVDTAN SLVYEANLRL RDPVYGSMGA 120 ISALQQQIQS LQAELSAIRA EILNYKYREA AATNIISSTH PALVSSATVT ISAPSQTLAP 180 PPPPPPPPPP SVVVSSSSSS SLYTPPTSTS GYSTISSDNN VPYFD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-42	42	149	11	118	LOB family transfactor Ramosa2.1
5ly0_B	4e-42	42	149	11	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0222s0070.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB970780	0.0	AB970780.1 Populus tremula x Populus tremuloides PtxtLBD15a mRNA for LOB domain-containing protein 15, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002319420.1	1e-137	LOB domain-containing protein 15 isoform X1
Swissprot	Q8L5T5	6e-79	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	B9I6X0	1e-136	B9I6X0_POPTR; LBD family protein
STRING	POPTR_0013s15220.1	1e-137	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	3e-75	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	SapurV1A.0222s0070.1.p

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]