PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0226s0070.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 345aa    MW: 38243.7 Da    PI: 7.9391
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0226s0070.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.56.2e-17106187186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             +W++  + +L++a+ e+ ++l+rg+l++ +Weev++ +++   ++s +qCk+k +nl+kryk ++++  ++ s sss++p+f+++e
  SapurV1A.0226s0070.3.p 106 EWSDVAIGCLLDAYLEKFTQLSRGNLRGRDWEEVAAMVKQ---SKSVEQCKNKVDNLKKRYKLERHRITSG-SISSSHWPWFQKME 187
                             5***********************************9988...589************************9.77888********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-17104189No hitNo description
Gene3DG3DSA:3.40.1160.105.0E-13244325IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536334.47E-9252320IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MASSCDEDFS LLGDDNHHHH ILYRYPTKST PIHAQPESIL HLEGEEEDRE DNNETDSAFE  60
DVNPYSDNEA SKRSEREGKI DGGGTPYNIY KRGRSGGGEY RKDREEWSDV AIGCLLDAYL  120
EKFTQLSRGN LRGRDWEEVA AMVKQSKSVE QCKNKVDNLK KRYKLERHRI TSGSISSSHW  180
PWFQKMEDIV GNSLPIKVAP PAPAPADEDN GNGGSGASSV SVPRQSKRYA NTIASPVGQT  240
NNMKPKSLSK TRWRRVILKI SGVALAGTGP NNIDPKVMTL IAREVALACQ LGLEIAIVVG  300
ARNFFCGDTW LSITGSHRRT AYQIGRFQNH TAGNELFGIL RKAE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0226s0070.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018866.10.0PREDICTED: uncharacterized protein LOC105121779 isoform X1
RefseqXP_011018868.10.0PREDICTED: uncharacterized protein LOC105121779 isoform X2
TrEMBLU5GCJ80.0U5GCJ8_POPTR; Uncharacterized protein
STRINGPOPTR_0006s11850.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.21e-109Trihelix family protein