PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0226s0110.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 228aa    MW: 26399.6 Da    PI: 9.4462
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0226s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.5e-2070122456
                             -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             + ++t++ql+ Le+ F+++++++ +++ +L+++lgL+ rq+ vWFqNrRa++k
  SapurV1A.0226s0110.1.p  70 KKRLTSDQLDSLEKSFQEENKLDPDRKIKLSRELGLQPRQIAVWFQNRRARWK 122
                             5569************************************************9 PP
2HD-ZIP_I/II119.51.7e-3868159192
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             e+k+rl+++q+ +LE+sF+ee+kL+p+rK +l+reLglqprq+avWFqnrRAR+k+kqlE+ y+ Lk+++d+++ee+++L++ev +L
  SapurV1A.0226s0110.1.p  68 ERKKRLTSDQLDSLEKSFQEENKLDPDRKIKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDNLKQEFDSVSEEKQKLQEEVIKL 154
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 reelk 92 
                             r+ ++
  SapurV1A.0226s0110.1.p 155 RAVVR 159
                             *8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.27E-1962126IPR009057Homeodomain-like
PROSITE profilePS5007117.7564124IPR001356Homeobox domain
SMARTSM003894.3E-1967128IPR001356Homeobox domain
PfamPF000463.8E-1769122IPR001356Homeobox domain
CDDcd000863.34E-1669125No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2171131IPR009057Homeodomain-like
PRINTSPR000315.8E-595104IPR000047Helix-turn-helix motif
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PRINTSPR000315.8E-5104120IPR000047Helix-turn-helix motif
PfamPF021835.2E-8124157IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MKNMDWNGNF RSFVSRPDQT SFNVLYNYNY DPQYPGMDMK HPAILAGNAP SRFEPTALDK  60
IASNGSQERK KRLTSDQLDS LEKSFQEENK LDPDRKIKLS RELGLQPRQI AVWFQNRRAR  120
WKAKQLERLY DNLKQEFDSV SEEKQKLQEE VIKLRAVVRE QATRKLGHAE KSGEETVLES  180
TSVAAASRKL RGHRQHQNSA EHCNYLLDVD EFNPVSSPYW ALLPSYP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116124RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0226s0110.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381334.11e-145putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR07e-52ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLU5GA011e-143U5GA01_POPTR; Uncharacterized protein
STRINGPOPTR_0006s11890.11e-144(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.13e-54homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]