PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0228s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 258aa    MW: 28999.8 Da    PI: 9.134
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0228s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.16.2e-301666151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krien   rqvtfskRrng+lKKA ELSvLCdaevaviifsstgklye+ss
  SapurV1A.0228s0130.1.p 16 KRIENLNSRQVTFSKRRNGLLKKARELSVLCDAEVAVIIFSSTGKLYEFSS 66
                            79***********************************************96 PP
2K-box68.62e-239818117100
                   K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                              + e++ +k+e+++L+ +  +++G++L+ Ls+k+Lq+Le+qL  +l +++++K+++l++q+++++++e++++ en+++r+++ee
  SapurV1A.0228s0130.1.p  98 NSAEVNAVKDELSKLRLTCLQMMGQQLDGLSFKDLQHLEHQLSAGLLSVKNRKEQMLMDQLKKSKMQEQKASLENECMRRQIEE 181
                             5789*****************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-43867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.515868IPR002100Transcription factor, MADS-box
CDDcd002653.86E-42976No hitNo description
SuperFamilySSF554558.76E-33987IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-301030IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001064IPR002100Transcription factor, MADS-box
PfamPF003191.2E-261764IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-303045IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-304566IPR002100Transcription factor, MADS-box
PfamPF014863.9E-1795179IPR002487Transcription factor, K-box
PROSITE profilePS5129712.13195185IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MTEERKRMGR GKIEIKRIEN LNSRQVTFSK RRNGLLKKAR ELSVLCDAEV AVIIFSSTGK  60
LYEFSSTSME HTLSKYGSGL DLDYNDRPSD DHGAEHPNSA EVNAVKDELS KLRLTCLQMM  120
GQQLDGLSFK DLQHLEHQLS AGLLSVKNRK EQMLMDQLKK SKMQEQKASL ENECMRRQIE  180
ELKRGSRPKS AFLELSPLDR RFSVASSKPD SNRKPQEEDD LSDTSLHLGL SSDVFHKRKA  240
AKIESVSNDS GSQVASG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-22876169MEF2C
5f28_B1e-22876169MEF2C
5f28_C1e-22876169MEF2C
5f28_D1e-22876169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0228s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458273.11e-176agamous-like MADS-box protein AGL18
SwissprotQ9M2K84e-68AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A2K1ZWX71e-175A0A2K1ZWX7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s04730.11e-148(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.12e-70AGAMOUS-like 18