PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0228s0170.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 228aa    MW: 26468 Da    PI: 7.442
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0228s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.58.6e-33191102102
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl k+y ++ed +++++isw+ +g+ fvv+++ ef++++Lpk Fkhsnf+SFvRQLn+YgF+kv +++         weF ++ F+k
  SapurV1A.0228s0170.1.p  19 FLLKTYMLVEDLATDDVISWNGEGTGFVVWQPAEFSRDLLPKLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNDMFRK 96 
                             9****************************************************************999.........********** PP

                             XXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkks 102
                             g+++ll +i+r+k 
  SapurV1A.0228s0170.1.p  97 GERDLLLQIRRRKA 110
                             ***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3512102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-4915108IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-3115108IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-2919108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-181942IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-185769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-187082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MADEKGLLEY VRKSTPPPFL LKTYMLVEDL ATDDVISWNG EGTGFVVWQP AEFSRDLLPK  60
LFKHSNFSSF VRQLNTYGFR KVATSRWEFC NDMFRKGERD LLLQIRRRKA WSKQPTAPFQ  120
VTPEEFEEED QRSSSTLSSS EYTTLVDENK RLKKENGFLS SELTSMKGKC RELLDLVAEH  180
AHLEKEEEND RPKLFGVRLE GEGERERKRK RAEIRESAAI FLSQSCK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B1e-20171133110Heat shock factor protein 2
5d8l_B1e-20171133110Heat shock factor protein 2
5d8l_D1e-20171133110Heat shock factor protein 2
5d8l_F1e-20171133110Heat shock factor protein 2
5d8l_H1e-20171133110Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0228s0170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2333221e-178CU233322.1 Populus EST from severe drought-stressed opposite wood.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048077.11e-136PREDICTED: heat stress transcription factor B-3
SwissprotO222304e-67HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLB9II851e-133B9II85_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05680.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.14e-65heat shock transcription factor B3