PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0230s0250.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 274aa    MW: 31148.4 Da    PI: 8.6652
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0230s0250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28.1e-18956148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd +l ++v+++G g+W+ I+++ g++R++k+c+ rw++yl
  SapurV1A.0230s0250.1.p  9 KGAWTEEEDIILRKCVEKYGEGRWHQIPSKAGLNRCRKSCRMRWLNYL 56
                            79********************************************97 PP
2Myb_DNA-binding43.86e-1462106147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg ++ +E + +++++k+lG++ W++Ia ++  gRt++++k++w+k 
  SapurV1A.0230s0250.1.p  62 RGQFSVDEVDMIIRLHKLLGNR-WSLIAGRLS-GRTANDVKNYWNKI 106
                             899*******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.29460IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-23659IPR009057Homeodomain-like
SuperFamilySSF466892.46E-296103IPR009057Homeodomain-like
SMARTSM007172.2E-16858IPR001005SANT/Myb domain
PfamPF002491.5E-16956IPR001005SANT/Myb domain
CDDcd001676.97E-121156No hitNo description
Gene3DG3DSA:1.10.10.605.5E-2260111IPR009057Homeodomain-like
SMARTSM007171.7E-1361109IPR001005SANT/Myb domain
PROSITE profilePS5129418.98461111IPR017930Myb domain
PfamPF002492.2E-1262107IPR001005SANT/Myb domain
CDDcd001676.52E-965107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MVGSLGVRKG AWTEEEDIIL RKCVEKYGEG RWHQIPSKAG LNRCRKSCRM RWLNYLKPSI  60
KRGQFSVDEV DMIIRLHKLL GNRWSLIAGR LSGRTANDVK NYWNKILRKK VFSSTDEAQS  120
KPEAKSTAKD NIIKPQPRKL KNLCWLRRES TPLFNGGSRH GNDLGKPRCT PASPPADYYE  180
VESLLWESLL DDREMNLTIN SSFLGSASAA NLESNESLFA ESNAPGGMKI GDAFFEQEQN  240
CWSTDICFDA DTWNLISTEL DQQRREELQS IML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-2391114105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0230s0250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444724.11e-148transcription factor MYB113 isoform X2
SwissprotQ9FNV92e-57MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2K1X7361e-146A0A2K1X736_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14470.11e-127(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-59myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]