PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0230s0270.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 269aa    MW: 30452.6 Da    PI: 8.4784
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0230s0270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-16956148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd ll ++v+++G g+W  I+ + g++R++k+c+ rw++yl
  SapurV1A.0230s0270.1.p  9 KGAWTEEEDILLRKCVEKYGEGRWCQIPLKAGLNRCRKSCRMRWLNYL 56
                            79********************************************97 PP
2Myb_DNA-binding44.73.1e-1462106147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg ++  E +l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  SapurV1A.0230s0270.1.p  62 RGQFSSGEVDLIIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTN 106
                             7899999***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.998460IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-22659IPR009057Homeodomain-like
SuperFamilySSF466894.97E-296103IPR009057Homeodomain-like
SMARTSM007179.4E-16858IPR001005SANT/Myb domain
PfamPF002493.1E-15956IPR001005SANT/Myb domain
CDDcd001676.04E-121156No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2260111IPR009057Homeodomain-like
SMARTSM007177.0E-1361109IPR001005SANT/Myb domain
PROSITE profilePS5129419.02161111IPR017930Myb domain
PfamPF002497.5E-1362107IPR001005SANT/Myb domain
CDDcd001673.54E-969107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MTSSFGVRKG AWTEEEDILL RKCVEKYGEG RWCQIPLKAG LNRCRKSCRM RWLNYLKPNI  60
KRGQFSSGEV DLIIRLHKLL GNRWSLIAGR LPGRTANDVK NYWNTNLSKK VVSSTRDAQT  120
KPEAKSITKH NIIKPRPRNF KNLCWLRAGK GTPFINVGSQ YGDDLCKPYS TTAFPPSDIN  180
EIESMWWESL LDDKEINPTN NNSCLGSCSA ANQEPIKNII VEDNPRGGIM IGDVFSEHGQ  240
NCWDDIAFDA DLWNLINTEI DQQGLEGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2391114105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0230s0270.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444002.11e-168transcription factor MYB90
SwissprotQ9FNV94e-64MY113_ARATH; Transcription factor MYB113
TrEMBLU5GFP31e-166U5GFP3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14470.11e-165(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-66myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]