PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0231s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 703aa    MW: 77725.3 Da    PI: 7.831
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0231s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.73.5e-172782156
                            TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                            ++  ++++ +q+++Le++F+++++p +++r++L++++gL  +q+k+WFqN+R++ k
  SapurV1A.0231s0010.1.p 27 KKAYHRHSYQQIQQLEKFFKECPHPHENQRRQLSREVGLAAKQIKFWFQNKRTQTK 82
                            577889999*******************************************9987 PP
2START127.81.3e-402244433206
                             HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGC CS
                   START   3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeq 71 
                             a +aa+elv++  a+ep+W ks+       +         ++  +k             ++e +++s++v+ + ++lv  +ld + +
  SapurV1A.0231s0010.1.p 224 AASAADELVRLLRANEPLWIKSPsdgryiiD---------RVGYEKLyarsgrfkssnARVESSKDSAMVTLPGMDLVDMFLDPN-K 300
                             67899******************76666662.........3322222333344455556**************************.7 PP

                             T-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EE CS
                   START  72 Wdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRael 147
                             W   ++    ka t+ v++ g      g lq m+ ++  lsplvp R+f+f+R ++ql+ g+wvi+d+S d  ++ +      Ra +
  SapurV1A.0231s0010.1.p 301 WIDLFPtivtKARTILVLEAGtvgnrnGSLQMMYEQMHILSPLVPrREFYFLRLCQQLEPGQWVIADISYDFLKDGSP----SRAWR 383
                             7777777777*****************************************************************986....89*** PP

                             SSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                   START 148 lpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                             lpSg++ie+k++g skvtwvehv++++r+  h l+r l+  + a ga +w a l+r ce+
  SapurV1A.0231s0010.1.p 384 LPSGCMIEDKPDGCSKVTWVEHVEVDDRTQtHRLYRDLICGRSAYGAERWIASLRRICER 443
                             ****************************999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-18882IPR009057Homeodomain-like
SuperFamilySSF466892.13E-161382IPR009057Homeodomain-like
PROSITE profilePS5007115.9532484IPR001356Homeobox domain
SMARTSM003899.9E-142688IPR001356Homeobox domain
PfamPF000461.1E-142782IPR001356Homeobox domain
CDDcd000864.06E-142782No hitNo description
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
PROSITE profilePS5084840.089213446IPR002913START domain
SuperFamilySSF559618.79E-28214444No hitNo description
CDDcd088751.43E-100217442No hitNo description
SMARTSM002342.4E-30222443IPR002913START domain
PfamPF018522.1E-34224443IPR002913START domain
Gene3DG3DSA:3.30.530.205.8E-7317407IPR023393START-like domain
SuperFamilySSF559611.65E-15464665No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MELSMGNNGG ASGDEHEAAS NSRNKGKKAY HRHSYQQIQQ LEKFFKECPH PHENQRRQLS  60
REVGLAAKQI KFWFQNKRTQ TKVLTQSERA DNSVLRSENE RIQCENLAFR EALKNVICPA  120
CGGPPFGEEE RQRSLLKLKM ENSRLKEEHE KVSALLTKYI GKPFDSLTPG AGSSQGVLPT  180
GAPNQGTTSH GIDLERNPGS DNRKLACRRG GIPDMEKALM AETAASAADE LVRLLRANEP  240
LWIKSPSDGR YIIDRVGYEK LYARSGRFKS SNARVESSKD SAMVTLPGMD LVDMFLDPNK  300
WIDLFPTIVT KARTILVLEA GTVGNRNGSL QMMYEQMHIL SPLVPRREFY FLRLCQQLEP  360
GQWVIADISY DFLKDGSPSR AWRLPSGCMI EDKPDGCSKV TWVEHVEVDD RTQTHRLYRD  420
LICGRSAYGA ERWIASLRRI CERLTFYKEE TAAAREFGGV VTSPEGRRSV VNLSHRMVKI  480
FFASLEMSGK LDFPQLSEVN NSGVRVAIRK NTEQGQPIGM VVSAATSLWL PLSPQNVFSF  540
FKDEKSRNQW DILSNGNPVR EISHISNGTD PGNCISIIRP FIPTENNMLV LQESCTDSSG  600
SMVVYAPVDI PAMNMVIGGE DSSIIPILPS GFVISGDGRP DTDSTGAGSG GSLLTVAFQI  660
LIAGPNATSS TELNMESVAT VNTLISTTVL KIKAALNCSN LD*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0231s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005937.10.0PREDICTED: homeobox-leucine zipper protein ROC8-like
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A2K2AR950.0A0A2K2AR95_POPTR; Uncharacterized protein
STRINGPOPTR_0004s07310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11