PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0231s0350.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 503aa    MW: 57262.1 Da    PI: 5.4105
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0231s0350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.44.7e-2942125186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             rW+kqe+laL+++r++m+  ++++ lk+plWeevskk+ e g++rs+k+Ckek+en+ k+++++keg+++r  ++ +t+++f+ql+
  SapurV1A.0231s0350.1.p  42 RWPKQETLALLKIRSDMDVMFKDTGLKAPLWEEVSKKLNELGYNRSAKKCKEKFENIYKYHRRTKEGRSGR--PNGKTYRFFEQLQ 125
                             8********************************************************************97..55568******98 PP
2trihelix101.75.6e-32339424187
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                             rW+k+e+ aLi +r+++e +++++  k+plWee+s+ m++ g+ rs+k+Ckekwen+nk++k++ke++k+r +++++tcpyf+ql+a
  SapurV1A.0231s0350.1.p 339 RWPKEEIEALIGLRTKLEFQYEENGPKGPLWEEISASMKKLGYDRSAKRCKEKWENMNKYFKRVKESNKRR-PGDKKTCPYFHQLDA 424
                             8********************************************************************97.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.3173599IPR017877Myb-like domain
SMARTSM007170.002739101IPR001005SANT/Myb domain
CDDcd122039.26E-2541106No hitNo description
PfamPF138377.3E-2041127No hitNo description
SuperFamilySSF466893.84E-5335414IPR009057Homeodomain-like
SMARTSM007179.3E-4336398IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-5337396IPR009057Homeodomain-like
PROSITE profilePS500907.642338396IPR017877Myb-like domain
CDDcd122034.65E-25338403No hitNo description
PfamPF138374.9E-22339425No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MEISTTFPEN SNAATGNRDS EEGDEEMRVK ADEGDQHSTG NRWPKQETLA LLKIRSDMDV  60
MFKDTGLKAP LWEEVSKKLN ELGYNRSAKK CKEKFENIYK YHRRTKEGRS GRPNGKTYRF  120
FEQLQALDNS EVLPPPPSSD KVHTSMAAAS VNPVSFIPSV VPCSFQSPGM NFVNTTSTST  180
ASTSSEESEG TTKKQQKLTD FFERLMKEVI EKQENLQNKF LEAIGRCEQE RIAREEAWRM  240
QELDRIKRER ELLVQERAIA AAKDAAVLAF LQKFSEQGIS VQLPDIPIVP MKFPDNQTAP  300
VPSSAPVQLP NNQAVPVENV VKTHENSSIE SFVNISPSRW PKEEIEALIG LRTKLEFQYE  360
ENGPKGPLWE EISASMKKLG YDRSAKRCKE KWENMNKYFK RVKESNKRRP GDKKTCPYFH  420
QLDALYREKN RRVEGSGHEL KPEELLMHMM GGQGDQQQPE SATTEDGESE NFSQNLENYR  480
DKEDGDGDRT VANDPSSMEL ME*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0231s0350.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045710.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-121TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLB9GGS30.0B9GGS3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s31660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-118Trihelix family protein