PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0233s0110.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 287aa    MW: 32660.8 Da    PI: 5.9931
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0233s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.72.8e-50101381129
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGfrF P+deelv++yL+kk++++++    ++ e+d++++ePw+Lp+ ++ + +ewyfFs rd+kyatg r+nrat++gyWkatg
  SapurV1A.0233s0110.1.p  10 LPPGFRFYPSDEELVCHYLHKKITNEEVLK-GTLVEIDLHTCEPWQLPEVARLNATEWYFFSFRDRKYATGFRTNRATTTGYWKATG 95 
                             79************************9655.78***************87777899******************************* PP

                     NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                             kd++vl+  ++e+vg++ktLvfy++rap+g kt W+mhe+rle
  SapurV1A.0233s0110.1.p  96 KDRTVLDPtTREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138
                             *******977888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-608156IPR003441NAC domain
PROSITE profilePS5100557.60410156IPR003441NAC domain
PfamPF023651.4E-2711137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGLRDIGATL PPGFRFYPSD EELVCHYLHK KITNEEVLKG TLVEIDLHTC EPWQLPEVAR  60
LNATEWYFFS FRDRKYATGF RTNRATTTGY WKATGKDRTV LDPTTREVVG MRKTLVFYRN  120
RAPNGIKTGW IMHEFRLETP HMHPKEDWVL CRVFHKCRAE DYNAKFSPQF MLEATANSGT  180
VNLAASPLSD HQTLACGYQQ MPSLSSSPTP PHQNQDQSSL LNLLQLSQAR NANPNASTDT  240
NSKALDEYGF LWDEMSLEET SLGDGVLASD LEDMRFEIDH NSMVFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-47915619168NAC domain-containing protein 19
3swm_B2e-47915619168NAC domain-containing protein 19
3swm_C2e-47915619168NAC domain-containing protein 19
3swm_D2e-47915619168NAC domain-containing protein 19
3swp_A2e-47915619168NAC domain-containing protein 19
3swp_B2e-47915619168NAC domain-containing protein 19
3swp_C2e-47915619168NAC domain-containing protein 19
3swp_D2e-47915619168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0233s0110.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307652.10.0NAC domain-containing protein 21/22
SwissprotQ84TE66e-62NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLB9H8N90.0B9H8N9_POPTR; Uncharacterized protein
STRINGcassava4.1_033050m1e-156(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43813359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-91NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]