PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0236s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 337aa    MW: 38048.1 Da    PI: 6.7274
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0236s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding568.8e-182673148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
  SapurV1A.0236s0090.1.p 26 RGLWSPEEDEKLIRYITIHGHGSWSSVPNLAGLERCGKSCRLRWINYL 73
                            788*******************************************97 PP
2Myb_DNA-binding482.8e-1579122146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+ T+ E+ ++vd ++ lG++ W+ Ia++++ gRt++++k++w++
  SapurV1A.0236s0090.1.p  79 RGSITEKEERIIVDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 122
                             7889******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-261776IPR009057Homeodomain-like
PROSITE profilePS5129418.3782173IPR017930Myb domain
SuperFamilySSF466897.1E-2923120IPR009057Homeodomain-like
SMARTSM007172.4E-132575IPR001005SANT/Myb domain
PfamPF002491.2E-152673IPR001005SANT/Myb domain
CDDcd001674.60E-112973No hitNo description
PROSITE profilePS5129424.70974128IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-2477129IPR009057Homeodomain-like
SMARTSM007171.9E-1478126IPR001005SANT/Myb domain
PfamPF002492.8E-1379122IPR001005SANT/Myb domain
CDDcd001671.20E-1083121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MVSCDIQEGL GNKMSHQCCR KQKVKRGLWS PEEDEKLIRY ITIHGHGSWS SVPNLAGLER  60
CGKSCRLRWI NYLRPDLKRG SITEKEERII VDIHRILGNR WAQIAKHLPG RTDNEVKNFW  120
NSCIKKKLIA QGLDPDTHNL LSDYNYKLNH ENNACKPSYH SHQQPTSTFT VVNSQMISGI  180
SSTDMKAPLI PFPMIPLAPD NNPPYPPLSH EFPSILTYEY QNPKTTASQS LVGSSVPILS  240
STSHPSEFGM LDESCMWAGG YEPIQSMIPE KRQAEQQLEI EKITSELASV GQNMDASFET  300
SNFDFAESSL LPCGMYYNQS SIDQLAWDSW ALQEKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30261287108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0236s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008225.10.0PREDICTED: transcription factor MYB86-like
TrEMBLA0A2K2BTZ30.0A0A2K2BTZ3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s12240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-81myb domain protein 67