PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0237s0250.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 243aa    MW: 27489.1 Da    PI: 4.9279
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0237s0250.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.3e-293191259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                            dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+edp+++eitY+g+H++ 
  SapurV1A.0237s0250.2.p 31 DDGYSWRKYGQKDILGAKYPRSYYRCTYRntqNCWATKQVQRSDEDPTIFEITYRGTHTCA 91
                            8***************************98899*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.0332588IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.7E-292791IPR003657WRKY domain
SuperFamilySSF1182903.66E-262991IPR003657WRKY domain
SMARTSM007742.4E-403092IPR003657WRKY domain
PfamPF031061.8E-273190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MFSDLDCRKT APRWTDHVRV SPENGLEGPH DDGYSWRKYG QKDILGAKYP RSYYRCTYRN  60
TQNCWATKQV QRSDEDPTIF EITYRGTHTC AHGNQSIPSP SSPEKQEKKQ KNTINNYQQQ  120
QSQQALYNFQ NSLKVITEDL DNKEMVSPFS FPSAYGCTEN VGSYSPSFIS PATPEPAHYS  180
VSPFQINNFL GAHDSQHLEQ DFAEIISANT SATNSPIVDL DFALDQVELD PNFPFDTPGF  240
FS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-1832881874Disease resistance protein RRS1
5w3x_D1e-1832881874Disease resistance protein RRS1
6ir8_A1e-183190968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0237s0250.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774410.0GQ377441.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304549.11e-155probable WRKY transcription factor 41
TrEMBLB9GXG91e-153B9GXG9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s13840.11e-154(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-57WRKY family protein