PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0239s0390.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 268aa    MW: 30855.3 Da    PI: 7.0272
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0239s0390.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-1857110356
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             k+++++ +q+++Le+ Fe ++++  e++ +LA +lgL+ rqV +WFqNrRa++k
  SapurV1A.0239s0390.1.p  57 KKRRLNLHQVKALEKNFEVENKLEPERKLKLAGELGLQPRQVAIWFQNRRARWK 110
                             5568999**********************************************9 PP
2HD-ZIP_I/II1231.4e-3956148193
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             ekkrrl+ +qvk+LE++Fe e+kLeperK +la eLglqprqva+WFqnrRAR+ktkqlE+dy +Lk++y+alk + ++Le+++e L
  SapurV1A.0239s0390.1.p  56 EKKRRLNLHQVKALEKNFEVENKLEPERKLKLAGELGLQPRQVAIWFQNRRARWKTKQLERDYGTLKASYEALKLDYSHLEQKNEVL 142
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 reelke 93 
                             ++++ke
  SapurV1A.0239s0390.1.p 143 AQKVKE 148
                             *99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-1943114IPR009057Homeodomain-like
PROSITE profilePS5007116.82752112IPR001356Homeobox domain
SMARTSM003892.6E-1655116IPR001356Homeobox domain
CDDcd000867.02E-1457113No hitNo description
PfamPF000461.5E-1557110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-1860119IPR009057Homeodomain-like
PRINTSPR000312.1E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000312.1E-592108IPR000047Helix-turn-helix motif
PfamPF021832.5E-14112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MKRFNSSDSS AAFISISSSK EERTQKANQG YSRDFQAMLD SLEEEDYSET ASHVSEKKRR  60
LNLHQVKALE KNFEVENKLE PERKLKLAGE LGLQPRQVAI WFQNRRARWK TKQLERDYGT  120
LKASYEALKL DYSHLEQKNE VLAQKVKELK AKLMSQEKAD SSHSVKEEYR VSESDNNASV  180
HSKIHDFSGN NNNSSAITKD PSNMSSSHEL MNWFQLSDSR VILGSRYQVY QPHLMKPEDQ  240
SLFSAEESCN FFSVDQAPTL HCYFPEQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0239s0390.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302314.11e-171homeobox-leucine zipper protein ATHB-6 isoform X1
TrEMBLB9GUZ91e-170B9GUZ9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s10080.11e-170(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.19e-57homeobox protein 16