PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0239s0390.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 231aa    MW: 26712.8 Da    PI: 6.6087
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0239s0390.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-182073356
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                            k+++++ +q+++Le+ Fe ++++  e++ +LA +lgL+ rqV +WFqNrRa++k
  SapurV1A.0239s0390.2.p 20 KKRRLNLHQVKALEKNFEVENKLEPERKLKLAGELGLQPRQVAIWFQNRRARWK 73
                            5568999**********************************************9 PP
2HD-ZIP_I/II123.51e-3919111193
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             ekkrrl+ +qvk+LE++Fe e+kLeperK +la eLglqprqva+WFqnrRAR+ktkqlE+dy +Lk++y+alk + ++Le+++e L
  SapurV1A.0239s0390.2.p  19 EKKRRLNLHQVKALEKNFEVENKLEPERKLKLAGELGLQPRQVAIWFQNRRARWKTKQLERDYGTLKASYEALKLDYSHLEQKNEVL 105
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 reelke 93 
                             ++++ke
  SapurV1A.0239s0390.2.p 106 AQKVKE 111
                             *99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-181277IPR009057Homeodomain-like
PROSITE profilePS5007116.8271575IPR001356Homeobox domain
SMARTSM003892.6E-161879IPR001356Homeobox domain
PfamPF000461.2E-152073IPR001356Homeobox domain
CDDcd000861.54E-142076No hitNo description
Gene3DG3DSA:1.10.10.601.4E-182382IPR009057Homeodomain-like
PRINTSPR000311.6E-54655IPR000047Helix-turn-helix motif
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
PRINTSPR000311.6E-55571IPR000047Helix-turn-helix motif
PfamPF021832.0E-1475116IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MLDSLEEEDY SETASHVSEK KRRLNLHQVK ALEKNFEVEN KLEPERKLKL AGELGLQPRQ  60
VAIWFQNRRA RWKTKQLERD YGTLKASYEA LKLDYSHLEQ KNEVLAQKVK ELKAKLMSQE  120
KADSSHSVKE EYRVSESDNN ASVHSKIHDF SGNNNNSSAI TKDPSNMSSS HELMNWFQLS  180
DSRVILGSRY QVYQPHLMKP EDQSLFSAEE SCNFFSVDQA PTLHCYFPEQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16775RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0239s0390.2.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302314.11e-145homeobox-leucine zipper protein ATHB-6 isoform X1
RefseqXP_024450611.11e-146homeobox-leucine zipper protein ATHB-6 isoform X2
TrEMBLB9GUZ91e-144B9GUZ9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s10080.11e-145(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.19e-54homeobox protein 16