PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0240s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YC
Protein Properties Length: 215aa    MW: 23704.9 Da    PI: 10.4348
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0240s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC39.31.4e-121111951498
                   NF-YC  14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                             +d    ++P+arik+i+k+++  + +s ++  l+ ka e f+ +++  ++  + + ++++l    ++++v++   fdfl d vp 
  SapurV1A.0240s0060.1.p 111 EDGTACRFPMARIKRIIKSEDSDSLLSQDVVFLVNKATEKFLEQFSDEAYDFSVQDRKKSLAYKHLSTVVSKRRRFDFLSDFVPG 195
                             5666778***************************************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.55E-1698195IPR009072Histone-fold
PfamPF008081.3E-16117180IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.7E-23118194IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MESAAKSKGK MKKKKSSGKE IVVVTKSKQE KKKSEIKTSS RSPREPVVLL LSSSSSSSGG  60
GDSQKVIEIE GEDDEPKSRV KNRSTKISKI KNGNNAKRKG KDGDFDGEGE EDGTACRFPM  120
ARIKRIIKSE DSDSLLSQDV VFLVNKATEK FLEQFSDEAY DFSVQDRKKS LAYKHLSTVV  180
SKRRRFDFLS DFVPGKLKAK DALADRKLAM TGEG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166184RKKSLAYKHLSTVVSKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0240s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2257765e-53CU225776.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313518.11e-103DNA polymerase epsilon subunit C isoform X1
TrEMBLB9HQA81e-102B9HQA8_POPTR; Uncharacterized protein
STRINGPOPTR_0009s01750.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120163031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.11e-28nuclear factor Y, subunit C10