PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0243s0160.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 581aa    MW: 67103.2 Da    PI: 6.252
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0243s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.78.7e-30126211187
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             rW++qe+l+L+e+r+ +++r++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qle
  SapurV1A.0243s0160.1.p 126 RWPRQETLTLLEIRSMLDSRFKEANQKGPLWDEVSRIMaEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLE 210
                             8*************************************999*****************************98..55667*******8 PP

                trihelix  87 a 87 
                             a
  SapurV1A.0243s0160.1.p 211 A 211
                             5 PP
2trihelix71.21.9e-22434518286
                trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             Wt+ e+l  i++r++me+r+++ g l+++lWee+++ m++ g+ rs ++Ckekwe++n ++  ++e++k+r +e+ +t  yf+ le
  SapurV1A.0243s0160.1.p 434 WTEPEILSFIQLRTSMESRFQEsGYLNEGLWEEIAEEMASLGYDRSVEECKEKWESMNIYFNMTTESNKNR-KEDLRTSNYFQLLE 518
                             *********************8467*********************************************8.77888999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.864119184IPR017877Myb-like domain
SMARTSM007170.25123186IPR001005SANT/Myb domain
CDDcd122032.48E-20125191No hitNo description
PfamPF138371.1E-20125212No hitNo description
SMARTSM007170.023350493IPR001005SANT/Myb domain
PROSITE profilePS500907.364434491IPR017877Myb-like domain
PfamPF138375.9E-17434519No hitNo description
CDDcd122033.69E-23434498No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MSEHHHQYGL PDLRRQLVPG RAHFQGTQQG NEPFFAQSRN LMPQTHNFEP IMVGHEAMLP  60
SGLVKLGGRH HNHYCTNVTN VNTNNTITSA TTGTSSSAGV CTLYGVEMEN ATAAGWIGND  120
GGNNSRWPRQ ETLTLLEIRS MLDSRFKEAN QKGPLWDEVS RIMAEEHGYQ RSGKKCREKF  180
ENLYKYYKKT KEGKAGRQDG KHYRFFRQLE ALYGEPGNQA SASESHFANN TLLYQTPLTS  240
NINHESQETF QENKHSESLS FSNTSEFETS SSENNGDDLS AIAYNMMNRS TEKQKGVDES  300
QSLAGPKKSW KAKVEDVVES QMRKLLEKQD AWMEKMLKTI EDREYERMCR EEEWTKQELA  360
RFDREHEFWA KERAWIESRD TALMAALKKH AEKGPELSSS DEQIAVANQR HRSNQDSTMS  420
AKKIQKDKFS NIIWTEPEIL SFIQLRTSME SRFQESGYLN EGLWEEIAEE MASLGYDRSV  480
EECKEKWESM NIYFNMTTES NKNRKEDLRT SNYFQLLESY NGMNSSPSNS YLGSQVNDNS  540
CFQVQINEGD PQQQQQQHLW NTNKFDLKLS KEKNQQDWRK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0243s0160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840630.0AC184063.2 Populus trichocarpa clone Pop1-108K13, complete sequence.
GenBankAC2144190.0AC214419.1 Populus trichocarpa clone POP109-H02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316512.30.0trihelix transcription factor PTL
TrEMBLA0A2K1YZ630.0A0A2K1YZ63_POPTR; Uncharacterized protein
STRINGPOPTR_0008s02580.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-104Trihelix family protein