PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0243s0300.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 473aa    MW: 51027 Da    PI: 8.6107
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0243s0300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.34.2e-1884168186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                             +W++  + +L+ea++e+ ++l+rg+l++ +Weev+++++erg    ++s +qCk+k++nl+kryk + ++ ++    s s++ +f++
  SapurV1A.0243s0300.1.p  84 EWSDTAISCLLEAYTEKYNQLNRGNLRGRDWEEVAEAVSERGGsnnKKSVEQCKNKIDNLKKRYKVELQRIGG----SASSWHWFKH 166
                             5*************************************8887645578*****************99999997....3557*****9 PP

                trihelix  85 le 86 
                             +e
  SapurV1A.0243s0300.1.p 167 IE 168
                             98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.2E-2382170No hitNo description
Gene3DG3DSA:3.40.1160.104.5E-71229465IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.7E-57232465IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.133232466IPR015963Uridylate kinase, bacteria
CDDcd042541.23E-116235466No hitNo description
PfamPF006961.1E-24236445IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MSTDDFPLLD AQPPHPATRH PDATSVTTTG DYYYSDHDKS AATPSSKRNH QSHYYNNNNK  60
RSKSNSNTEL ESSDYRDYRK DREEWSDTAI SCLLEAYTEK YNQLNRGNLR GRDWEEVAEA  120
VSERGGSNNK KSVEQCKNKI DNLKKRYKVE LQRIGGSASS WHWFKHIEAI MGNASNGKSS  180
SGGAAAGGDS EGGGGGGGSC GNVNVVVKQV KRYTSGSATF ANSLKTKPVS NLKWRRVVFK  240
ISGSALAGNC QNIDPKVAMQ IAQEVATASR VGLEIAIVLG GRNFFCGDSW ISATGLERPT  300
AYQIGMMATV MNSILLQSAL EKHGVQARVQ SAFTMPELAE PYSRQRAIRH LEKGRVVIFG  360
GVGAGAGNPL FTTDTAAALR ASEINADALL KGTSVNGVYD RHAGNSNILL DHISFRDVVS  420
RGATSMDMMA ITYCEENGIP VVVFNLLEPG NISRALCGDQ VGTLIDQAGR IA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A7e-6423446550279Uridylate kinase
3nwy_B7e-6423446550279Uridylate kinase
3nwy_C7e-6423446550279Uridylate kinase
3nwy_D7e-6423446550279Uridylate kinase
3nwy_E7e-6423446550279Uridylate kinase
3nwy_F7e-6423446550279Uridylate kinase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0243s0300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465256.10.0uncharacterized protein LOC7468468
SwissprotQ3AV989e-75PYRH_SYNS9; Uridylate kinase
TrEMBLA0A2K1YZ330.0A0A2K1YZ33_POPTR; Uncharacterized protein
STRINGPOPTR_0010s23970.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-150Trihelix family protein