PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0247s0170.10.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 410aa    MW: 45177.4 Da    PI: 7.9795
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0247s0170.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.8e-17161210155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  SapurV1A.0247s0170.10.p 161 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 210
                              78*******************......55************************997 PP
2AP242.41.8e-13253303155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  SapurV1A.0247s0170.10.p 253 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 303
                              89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.18E-16161220IPR016177DNA-binding domain
PfamPF008474.4E-9161210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-17162219IPR001471AP2/ERF domain
SMARTSM003805.3E-33162224IPR001471AP2/ERF domain
CDDcd000187.48E-12162220No hitNo description
PROSITE profilePS5103217.794162218IPR001471AP2/ERF domain
CDDcd000185.67E-26253313No hitNo description
PfamPF008474.2E-9253303IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-17253312IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.5E-16254311IPR001471AP2/ERF domain
PROSITE profilePS5103215.514254311IPR001471AP2/ERF domain
SMARTSM003801.4E-31254317IPR001471AP2/ERF domain
PRINTSPR003673.9E-6255266IPR001471AP2/ERF domain
PRINTSPR003673.9E-6293313IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MLDLNLTAVS GDSSTTVKRN NNSNKKILEL SNSPMESSGS FNSSSVVNAD GCGDEDSCSN  60
GEVFALNFSI LANESSSKKT VYSNNNDDDH SDRGDRTIQL FPVECGTKNA GGGSTSSPAV  120
QMQRMDLGGS LNYGVPPEQG IGAQQQKPVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW  180
DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFNVS DYDEDIKQMS NFTKEEFVHI  240
LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEIEA ARAYDKAAIK  300
CNGREAVTNF EPSTYEVEML SEPNSGVTYT DGNQNLDLNL GIAPPDTSDI LKVNSNVGGF  360
YFHSGWDGVS TDRAPKVPLK SMLTFLRPKW ESVCLFLKAY LSMIFLMCS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0247s0170.10.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322849.20.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotB8AMA91e-103AP22_ORYSI; APETALA2-like protein 2
TrEMBLA0A2K1XCT20.0A0A2K1XCT2_POPTR; Uncharacterized protein
STRINGPOPTR_0006s13460.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-104related to AP2.7