PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0247s0170.12.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 294aa    MW: 32331.7 Da    PI: 8.893
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0247s0170.12.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-17161210155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  SapurV1A.0247s0170.12.p 161 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 210
                              78*******************......55************************997 PP
2AP229.32.2e-09253292144
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44 
                              s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+
  SapurV1A.0247s0170.12.p 253 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAAR 292
                              89********.7******5553..2.26**********99**98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-16161220IPR016177DNA-binding domain
PfamPF008472.7E-9161210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-17162219IPR001471AP2/ERF domain
SMARTSM003805.3E-33162224IPR001471AP2/ERF domain
CDDcd000182.60E-12162220No hitNo description
PROSITE profilePS5103217.794162218IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-8253292IPR016177DNA-binding domain
PfamPF008472.8E-5253292IPR001471AP2/ERF domain
CDDcd000189.60E-14253293No hitNo description
Gene3DG3DSA:3.30.730.101.3E-5254292IPR001471AP2/ERF domain
SMARTSM003808.7E-5254293IPR001471AP2/ERF domain
PROSITE profilePS5103210.402254293IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MLDLNLTAVS GDSSTTVKRN NNSNKKILEL SNSPMESSGS FNSSSVVNAD GCGDEDSCSN  60
GEVFALNFSI LANESSSKKT VYSNNNDDDH SDRGDRTIQL FPVECGTKNA GGGSTSSPAV  120
QMQRMDLGGS LNYGVPPEQG IGAQQQKPVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW  180
DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFNVS DYDEDIKQMS NFTKEEFVHI  240
LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEIEA ARS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0247s0170.12.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322849.21e-164ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotB8AMA91e-85AP22_ORYSI; APETALA2-like protein 2
SwissprotQ84TB51e-85AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A2K1XCT21e-163A0A2K1XCT2_POPTR; Uncharacterized protein
STRINGPOPTR_0006s13460.11e-148(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-86related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]