PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0248s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 115aa    MW: 13121.6 Da    PI: 10.1952
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0248s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.2e-14586283
                            EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3  2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk 83
                             k lt+ d  ++ rl++p +++e+    g      ++  ++de g+ W++++++rkk++   v++k W++Fv+ ++L++gD+++F+
  SapurV1A.0248s0080.1.p  5 SKLLTKTD-IEK-RLSFPTRCLESLpcfGR--GHAVDFHVMDECGQLWTFRCTIRKKKNPkPVISKDWSKFVSRKNLDVGDMITFS 86
                            44454444.433.59*******999*9743..356899**************997777666************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-16389IPR015300DNA-binding pseudobarrel domain
CDDcd100175.81E-17385No hitNo description
SuperFamilySSF1019366.28E-15390IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-11586IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MAIFSKLLTK TDIEKRLSFP TRCLESLPCF GRGHAVDFHV MDECGQLWTF RCTIRKKKNP  60
KPVISKDWSK FVSRKNLDVG DMITFSKLEN IVGCAFYKIE VKKPVKLFGV NVGY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0248s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011302.16e-39PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
TrEMBLB9IBY35e-70B9IBY3_POPTR; Uncharacterized protein
STRINGPOPTR_0014s06350.18e-71(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-08related to ABI3/VP1 1