PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0249s0140.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 512aa    MW: 55007.8 Da    PI: 4.4729
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0249s0140.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.6e-12306351555
                             HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             h+++Er RR++i +++ +L+el+P++      K++Ka++L + +eY+k Lq
  SapurV1A.0249s0140.2.p 306 HSIAERLRREKIAERMKNLQELVPNS-----NKVDKASMLDEIIEYVKFLQ 351
                             99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.3E-16299361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.57E-12299355No hitNo description
PROSITE profilePS5088817.028301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16303360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-9306351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-13307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MMDEYLNHFI SSSSVVDGDA KERSSWVCSE PNQPNAFLPT SLELYQDDKK NSPVSMISSN  60
QSVESLATQD TSSVFLGSES DFAVDKGLIS EQAQLQNDCQ NCNGNPSTDE MACGNLKFGN  120
MDLQCNAILP ILSSLNYQFQ LPIVGDLTSY ISFSEANNAE CNGIEQSEHL RSLKNLQNLS  180
SIPQLWSSQS YEGVSSLPPM MGQDRIEGSG LRGGNLDDDM HIMGKGYVGM DKILRLDKLS  240
ASPTTEGTED LQTCPFSSGI DEPNINMEMN QLSSMPQSTS AAPVEGSNGT GKPRVRARRG  300
QATDPHSIAE RLRREKIAER MKNLQELVPN SNKVDKASML DEIIEYVKFL QLQVKVLSMS  360
RLGAAGAVIP LLTDGQPEGH NSLLLAPSAG LGIDISPSAD QIAFEQEVLK LLESDATMAM  420
QYLQSKGLCL MPIALAAAIS SVKASLSGTT SEERKNNGFT KGLVSSSSSL TGIDTHPMSS  480
DNNIATGKLS SKGIIANGCN EVVKQEVLKN T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0249s0140.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381552.10.0uncharacterized protein LOC18100273
TrEMBLU5GAR60.0U5GAR6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s13790.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.13e-61LJRHL1-like 3