PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0250s0210.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Dof

Protein Properties

Length: 296aa MW: 33095.5 Da PI: 8.7774

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0250s0210.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.4	4.2e-40	34	95	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss SapurV1A.0250s0210.1.p 34 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKNCRRYWTEGGSLRNVPVGGGSRKNKRSSS 95 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-26	26	83	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.9E-34	35	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.413	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MDTATQWVQG NIGVVKPVEG PRSDVLERRA RPQKDQALNC PRCNSTNTKF CYYNNYSLSQ 60 PRYFCKNCRR YWTEGGSLRN VPVGGGSRKN KRSSSAPSTS AASSRKFPHD LTQPCFPQSA 120 SQNPKIHEGQ DLNLAYPPSA DDYSNLSNFV EIPFDSTERN KTHHQNPNPS RTSPSHHHHF 180 SHMEFLKSTA MNSRGFSSFM SIPALSDPNN TMFSTGFPIQ EFKSTQSFSL EGLENRYSNI 240 QGVHETGGSA RVLFPVEDLK QQVPSNTEFE QNITREQRDS APAGYWNGML SGGSW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0250s0210.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002317793.3	1e-167	dof zinc finger protein 1
TrEMBL	A0A2I4KKM7	1e-166	A0A2I4KKM7_POPTR; Dof family protein
STRING	POPTR_0012s02570.1	1e-167	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-42	Dof family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0250s0210.1.p