PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0250s0360.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Nin-like
Protein Properties Length: 251aa    MW: 29355.4 Da    PI: 5.0369
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0250s0360.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK80.12.3e-25141189452
                  RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                             e++le+++k+F++pi++AA+e++v+lTvLK++CR++ I+RWPhRkiksl
  SapurV1A.0250s0360.1.p 141 ELELEEIQKHFNKPITQAAREMKVGLTVLKKRCREFRIMRWPHRKIKSL 189
                             799********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.517124210IPR003035RWP-RK domain
PfamPF020425.0E-22142189IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MENPLDFEPW ILDDQDIFNQ ISELPPLESL FEQLNLPLPL VPYDRNFNEL KNNEDVNNIF  60
SESNLDSWYS QENAIDTKPV INPSIHPSFS LSFDDNVIKS EQLNEVSMMF VHGDCASSSS  120
MIKEEEEEET RKMSGRKRSV ELELEEIQKH FNKPITQAAR EMKVGLTVLK KRCREFRIMR  180
WPHRKIKSLT SLINNVKEMG LSEYEAIMLE EHKRLIEELP DVELTERTKK LRQACFKANY  240
KKRRLSAGYS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0250s0360.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318433.11e-145protein RKD4
TrEMBLB9I1X31e-143B9I1X3_POPTR; Uncharacterized protein
STRINGPOPTR_0012s02390.11e-144(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68983247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.12e-41RWP-RK domain-containing protein