PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0255s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 204aa    MW: 23528.8 Da    PI: 6.9529
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0255s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-1948102357
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                             k++++++eq++ Le  F +++++  +++ +LA++lgL+ rqV vWFqNrRa++k+
  SapurV1A.0255s0060.1.p  48 KKRKLSEEQVNLLEMNFGSEHKLESDRKDKLASELGLDPRQVAVWFQNRRARWKN 102
                             45689************************************************95 PP
2HD-ZIP_I/II121.35e-3948138292
             HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                             kkr+ls+eqv+lLE++F +e+kLe++rK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++++ e+++Le+ev +L+
  SapurV1A.0255s0060.1.p  48 KKRKLSEEQVNLLEMNFGSEHKLESDRKDKLASELGLDPRQVAVWFQNRRARWKNKKLEEEYTKLKTSHETIVVEKCQLESEVLKLK 134
                             9************************************************************************************** PP

             HD-ZIP_I/II  89 eelk 92 
                             e+l 
  SapurV1A.0255s0060.1.p 135 EQLC 138
                             *996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.50343103IPR001356Homeobox domain
SuperFamilySSF466897.7E-1846110IPR009057Homeodomain-like
SMARTSM003891.2E-1846107IPR001356Homeobox domain
PfamPF000461.0E-1648102IPR001356Homeobox domain
CDDcd000865.90E-1648104No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2050110IPR009057Homeodomain-like
PRINTSPR000318.0E-67483IPR000047Helix-turn-helix motif
PROSITE patternPS00027078101IPR017970Homeobox, conserved site
PRINTSPR000318.0E-68399IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MNHKVEDHMA LISQLYPGVF TQMVPQQGES KPRRRRKKNK DAGLSGAKKR KLSEEQVNLL  60
EMNFGSEHKL ESDRKDKLAS ELGLDPRQVA VWFQNRRARW KNKKLEEEYT KLKTSHETIV  120
VEKCQLESEV LKLKEQLCEA EKEIQRLSDR ADGVSTNSPS SSLSMAMDPP FLGEFAMEGY  180
EDAFYMPPEN NYVPGMEWIN LYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13350RRRKKNKDAGLSGAKKRK
23550RKKNKDAGLSGAKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0255s0060.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025724.11e-122PREDICTED: homeobox-leucine zipper protein ATHB-40
SwissprotO232081e-78ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A2K1ZNF31e-119A0A2K1ZNF3_POPTR; Uncharacterized protein
STRINGPOPTR_0007s12450.11e-121(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-70homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]