PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0258s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YA
Protein Properties Length: 214aa    MW: 23537.7 Da    PI: 9.7987
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0258s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.52.9e-3085140258
               CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                              p+YVNaKQy++I++RR++Rak+  ekkl ++srkpy+h SRh hA+rRpRg+gGrF
  SapurV1A.0258s0010.1.p  85 GPMYVNAKQYHGIMRRRKSRAKAVLEKKL-TNSRKPYMHYSRHLHAMRRPRGCGGRF 140
                             79***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.7E-3382143IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.43383143IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.9E-2686140IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.7E-2286108IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.7E-22117140IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MLTNQVISHS GDYKTSADGQ KTLQAAISLQ TTLPEYRAHF DLEFGQPVIC TKYPRVDQCY  60
GVFSSFGPQI SGRIMLPMSM TADDGPMYVN AKQYHGIMRR RKSRAKAVLE KKLTNSRKPY  120
MHYSRHLHAM RRPRGCGGRF LNTKELNGGK GTMEAKKAGD FELSQATGSQ NSEVLESGGA  180
TLNSSMEANG GGSILSGSEV TSMYNRGELD LLQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A9e-1884145264HAPB protein
4g92_A9e-1884145264HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197102MRRRKS
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0258s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2101325e-84AC210132.1 Populus trichocarpa clone POP011-D09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322774.21e-137nuclear transcription factor Y subunit A-10
RefseqXP_002322775.21e-137nuclear transcription factor Y subunit A-10
SwissprotQ8LFU05e-50NFYAA_ARATH; Nuclear transcription factor Y subunit A-10
TrEMBLB9IIJ31e-136B9IIJ3_POPTR; Uncharacterized protein
STRINGPOPTR_0016s06860.31e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.31e-52nuclear factor Y, subunit A10
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  3. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]