PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0258s0090.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

YABBY

Protein Properties

Length: 215aa MW: 23968.2 Da PI: 8.9873

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0258s0090.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	170.8	8.9e-53	49	208	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPst..s.lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksn 85 ++ +se+vCyv+CnfCntil+v++P + s +++vtvrCGhC++lls+n q+ hl++s k++ll ++ +e+++ SapurV1A.0258s0090.1.p 49 SLEIASERVCYVHCNFCNTILVVNIPCSnnSiELNTVTVRCGHCANLLSLNTGSLLQTA----HLQDSHKQNLLYQDLSEGSQ---- 127 567799******************651132479**********8877665543....44555555544444333332.... PP YABBY 86 vekeesastsvsseklsenedeevprvppv.irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+st ++++ l+ +++e+ r+ v k+qr Psaynrfikeei+rika+nP+ishreafs aaknWah+P+ fgl SapurV1A.0258s0090.1.p 128 -----SSSTGNKVSALEPSRNEQPGRTVAVhAAMGKKQQRTPSAYNRFIKEEIRRIKANNPEISHREAFSNAAKNWAHLPHTQFGL 208 .....222222233333333333333333303456899********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.7E-61	53	208	IPR006780	YABBY protein
SuperFamily	SSF47095	8.51E-8	152	203	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.3E-5	161	204	IPR009071	High mobility group box domain
CDD	cd01390	1.92E-5	162	205	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MTCNRRHHLT TNHTAKTKDS KYLHLSKTVA CFLYKLVFID HLQSCPIMSL EIASERVCYV 60 HCNFCNTILV VNIPCSNNSI ELNTVTVRCG HCANLLSLNT GSLLQTAHLQ DSHKQNLLYQ 120 DLSEGSQSSS TGNKVSALEP SRNEQPGRTV AVHAAMGKKQ QRTPSAYNRF IKEEIRRIKA 180 NNPEISHREA FSNAAKNWAH LPHTQFGLTL NDTA*

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs. {ECO:0000269\|PubMed:15604733, ECO:0000269\|PubMed:17369428}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0258s0090.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024443210.1	1e-101	putative axial regulator YABBY 2
Swissprot	Q7XIM7	1e-48	YAB1_ORYSJ; Protein YABBY 1
TrEMBL	A0A3N7G523	2e-99	A0A3N7G523_POPTR; Uncharacterized protein
STRING	POPTR_0016s06760.1	1e-106	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-48	YABBY family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0258s0090.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Ohmori Y,Abiko M,Horibata A,Hirano HY A transposon, Ping, is integrated into intron 4 of the DROOPING LEAF gene of rice, weakly reducing its expression and causing a mild drooping leaf phenotype. Plant Cell Physiol., 2008. 49(8): p. 1176-84 [PMID:18593744] Ohmori Y,Toriba T,Nakamura H,Ichikawa H,Hirano HY Temporal and spatial regulation of DROOPING LEAF gene expression that promotes midrib formation in rice. Plant J., 2011. 65(1): p. 77-86 [PMID:21175891] Li H, et al. Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate. Plant Cell, 2011. 23(7): p. 2536-52 [PMID:21784949] Tanaka W, et al. The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet. Plant Cell, 2012. 24(1): p. 80-95 [PMID:22286138] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]