PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0258s0090.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

YABBY

Protein Properties

Length: 168aa MW: 18470.8 Da PI: 8.393

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0258s0090.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	171.7	4.7e-53	2	161	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPst..s.lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksn 85 ++ +se+vCyv+CnfCntil+v++P + s +++vtvrCGhC++lls+n q+ hl++s k++ll ++ +e+++ SapurV1A.0258s0090.2.p 2 SLEIASERVCYVHCNFCNTILVVNIPCSnnSiELNTVTVRCGHCANLLSLNTGSLLQTA----HLQDSHKQNLLYQDLSEGSQ---- 80 56789*******************651132479**********8877665543....44555555544444333332.... PP YABBY 86 vekeesastsvsseklsenedeevprvppv.irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+st ++++ l+ +++e+ r+ v k+qr Psaynrfikeei+rika+nP+ishreafs aaknWah+P+ fgl SapurV1A.0258s0090.2.p 81 -----SSSTGNKVSALEPSRNEQPGRTVAVhAAMGKKQQRTPSAYNRFIKEEIRRIKANNPEISHREAFSNAAKNWAHLPHTQFGL 161 .....222222233333333333333333303456899********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.1E-61	6	161	IPR006780	YABBY protein
SuperFamily	SSF47095	5.24E-8	105	156	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	8.5E-6	114	157	IPR009071	High mobility group box domain
CDD	cd01390	9.14E-6	115	158	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MSLEIASERV CYVHCNFCNT ILVVNIPCSN NSIELNTVTV RCGHCANLLS LNTGSLLQTA 60 HLQDSHKQNL LYQDLSEGSQ SSSTGNKVSA LEPSRNEQPG RTVAVHAAMG KKQQRTPSAY 120 NRFIKEEIRR IKANNPEISH REAFSNAAKN WAHLPHTQFG LTLNDTA*

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs. {ECO:0000269\|PubMed:15604733, ECO:0000269\|PubMed:17369428}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0258s0090.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024443210.1	1e-101	putative axial regulator YABBY 2
Swissprot	Q10FZ7	2e-49	YAB2_ORYSJ; Protein YABBY 2
Swissprot	Q7XIM7	1e-49	YAB1_ORYSJ; Protein YABBY 1
TrEMBL	A0A3N7G523	1e-100	A0A3N7G523_POPTR; Uncharacterized protein
STRING	POPTR_0016s06760.1	1e-106	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-49	YABBY family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0258s0090.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Ohmori Y,Abiko M,Horibata A,Hirano HY A transposon, Ping, is integrated into intron 4 of the DROOPING LEAF gene of rice, weakly reducing its expression and causing a mild drooping leaf phenotype. Plant Cell Physiol., 2008. 49(8): p. 1176-84 [PMID:18593744] Ohmori Y,Toriba T,Nakamura H,Ichikawa H,Hirano HY Temporal and spatial regulation of DROOPING LEAF gene expression that promotes midrib formation in rice. Plant J., 2011. 65(1): p. 77-86 [PMID:21175891] Li H, et al. Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate. Plant Cell, 2011. 23(7): p. 2536-52 [PMID:21784949] Tanaka W, et al. The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet. Plant Cell, 2012. 24(1): p. 80-95 [PMID:22286138] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]