PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0258s0090.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family YABBY
Protein Properties Length: 159aa    MW: 17400.5 Da    PI: 8.6708
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0258s0090.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY131.31.2e-401415223170
                   YABBY  23 avsvPst..s.lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsened 106
                              v++P +  s  +++vtvrCGhC++lls+n     q+     hl++s k++ll ++ +e+++         s+st ++++ l+ +++
  SapurV1A.0258s0090.3.p  14 HVNIPCSnnSiELNTVTVRCGHCANLLSLNTGSLLQTA----HLQDSHKQNLLYQDLSEGSQ---------SSSTGNKVSALEPSRN 87 
                             46677431131479**************8877665543....44555555544444333332.........2222222333333333 PP

                   YABBY 107 eevprvppv.irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                             e+  r+  v      k+qr Psaynrfikeei+rika+nP+ishreafs aaknWah+P+  fgl
  SapurV1A.0258s0090.3.p  88 EQPGRTVAVhAAMGKKQQRTPSAYNRFIKEEIRRIKANNPEISHREAFSNAAKNWAHLPHTQFGL 152
                             33333333303456899**********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.7E-4813152IPR006780YABBY protein
SuperFamilySSF470954.71E-896148IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.107.7E-6105148IPR009071High mobility group box domain
CDDcd013907.55E-6106149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MLQSPDCFLV VSVHVNIPCS NNSIELNTVT VRCGHCANLL SLNTGSLLQT AHLQDSHKQN  60
LLYQDLSEGS QSSSTGNKVS ALEPSRNEQP GRTVAVHAAM GKKQQRTPSA YNRFIKEEIR  120
RIKANNPEIS HREAFSNAAK NWAHLPHTQF GLTLNDTA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0258s0090.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443210.18e-83putative axial regulator YABBY 2
SwissprotQ10FZ72e-36YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A3N7G5232e-81A0A3N7G523_POPTR; Uncharacterized protein
STRINGPOPTR_0016s06760.11e-87(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.29e-39YABBY family protein