PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0260s0250.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GRF

Protein Properties

Length: 169aa MW: 18868.8 Da PI: 10.3494

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0260s0250.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	58.6	1.1e-18	136	168	1	33
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlh 33 ++epgrCrRtDGKkWRCs++vl+ +k+C++H+h SapurV1A.0260s0250.1.p 136 EPEPGRCRRTDGKKWRCSKEVLPCQKYCDKHIH 168 69*****************************98 PP
2	QLQ	25.5	4.1e-10	65	97	3	35
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 FT Qlq+L Q l+yKy+ + PvP +L+++i SapurV1A.0260s0250.1.p 65 FTILQLQELQLQSLIYKYIQVKSPVPYHLVLPI 97 7888****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51666	15.9	64	99	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.1E-8	65	97	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	20.392	136	168	IPR014977	WRC domain
Pfam	PF08879	3.9E-15	137	168	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MEPQAPPSRI ARLSNSRTGL RDGWNMEGNR RNGRSRSPPI GLGAELGLGG SSQRSRTGCK 60 ITYGFTILQL QELQLQSLIY KYIQVKSPVP YHLVLPILKS VATSLGALSS GLYQLYPSLM 120 GSKCNPLHLE YKNRTEPEPG RCRRTDGKKW RCSKEVLPCQ KYCDKHIH*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269\|PubMed:24854713}.
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0260s0250.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002298083.2	2e-94	growth-regulating factor 10
Swissprot	A5HEG9	4e-32	GRF10_MAIZE; GRF-interacting factor 10
Swissprot	Q6AWX7	2e-32	GRF12_ORYSJ; Growth-regulating factor 12
TrEMBL	B9GKS4	5e-93	B9GKS4_POPTR; Uncharacterized protein
STRING	POPTR_0001s08310.1	8e-94	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14195	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	3e-19	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	SapurV1A.0260s0250.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Soderlund C, et al. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430] Zhang D, et al. GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize. Plant Cell, 2018. 30(2): p. 360-374 [PMID:29437990]