PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0262s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 294aa    MW: 33421.6 Da    PI: 7.0255
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0262s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-12121165347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +WT++E+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
  SapurV1A.0262s0080.1.p 121 PWTEDEHRRFLLGLLKHGKGDWRNISRNFVVSKTPTQVASHAQKY 165
                             8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.7071772IPR017884SANT domain
SMARTSM007171.3E-41870IPR001005SANT/Myb domain
SuperFamilySSF466894.93E-102074IPR009057Homeodomain-like
CDDcd001677.52E-62167No hitNo description
PROSITE profilePS5129418.585114170IPR017930Myb domain
SuperFamilySSF466898.97E-16115170IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-17117169IPR006447Myb domain, plants
SMARTSM007175.3E-10118168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-9118164IPR009057Homeodomain-like
CDDcd001672.94E-8121166No hitNo description
PfamPF002495.7E-10121165IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
METLYPSCYM SNSNWFTQTT EWTREENKEF EIALAIFDEH EPDRWLKVAA MIPGKTVYDV  60
IKQYKELEED VSDIEAGRVP VPGYLSSSLT FQLVGNSNFD SYRKRSFTAK SADQQRKKGV  120
PWTEDEHRRF LLGLLKHGKG DWRNISRNFV VSKTPTQVAS HAQKYFIRQQ LSGVKDKRRP  180
SIHDITTVNL ADTTTPSDGD EPSSLDQSDV LLSQQKPAGM QKVLIDWDES KDGSIMVCDS  240
THGDLFKSSP YDMPSTGLKF PGQNLYVGAH HGARINPHNM VFKLPPPRFQ IQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-14221101193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0262s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036008.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-96DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLB9HT090.0B9HT09_POPTR; Uncharacterized protein
STRINGPOPTR_0010s20040.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.15e-85MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]