PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0263s0400.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 270aa    MW: 30096.4 Da    PI: 5.3396
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0263s0400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-153174146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                            rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
  SapurV1A.0263s0400.2.p 31 RGNISDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWHT 74
                            78999*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.182725IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-101137IPR009057Homeodomain-like
SuperFamilySSF466891.11E-181179IPR009057Homeodomain-like
PROSITE profilePS5129423.8772680IPR017930Myb domain
SMARTSM007171.2E-143078IPR001005SANT/Myb domain
PfamPF002498.2E-143174IPR001005SANT/Myb domain
CDDcd001679.60E-123576No hitNo description
Gene3DG3DSA:1.10.10.605.2E-203875IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MPACTVHVGL KRCGKSCRLR WMNYLRPGVK RGNISDDEED LIIRLHKLLG NRWSLIAGRL  60
PGRTDNEIKN YWHTNIAKKA PHLQSRRQPR AVDRKQVLPA GSENGAETSS NFKNHQTIES  120
QGCTPGVAAP TTALQENNMA QDLAGTLAMA PSNTHHENGS SRKGLASGDN DNLSDILTDF  180
HYMEDFYMIL DSDYPKLNEI TGTADYHSNN TIQVDDDDYS MSINGCNPRE IAEFSEKLME  240
ADWTSNNCVQ PDQGFDFMSL LSFLDSTDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-19128040108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0263s0400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5731500.0FJ573150.1 Populus tremuloides MYB transcription factor R2R3-like protein (MYB097) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382176.11e-149transcription factor WER
TrEMBLA0A3N7F8N51e-148A0A3N7F8N5_POPTR; Uncharacterized protein
STRINGPOPTR_0006s29080.11e-149(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-42MYB family protein