PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0264s0440.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 329aa    MW: 36939.7 Da    PI: 9.2812
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0264s0440.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.4e-181461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g W+++Ede+l+++++++G g+W+++++  g+ R++k+c++rw +yl
  SapurV1A.0264s0440.1.p 14 KGLWSPDEDEKLLRYITKHGHGCWSSVPKLAGLERCGKSCRLRWINYL 61
                            678*******************************************97 PP
2Myb_DNA-binding38.33e-1267109145
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                             rg ++ +E+ l++++   lG++ W+ Ia++++ gRt++++k+ w+
  SapurV1A.0264s0440.1.p  67 RGGFSSQEENLIIQLQSVLGNR-WSQIAARLP-GRTDNEIKNLWN 109
                             7889******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-25664IPR009057Homeodomain-like
PROSITE profilePS5129424.985965IPR017930Myb domain
SuperFamilySSF466891.39E-2812108IPR009057Homeodomain-like
SMARTSM007171.4E-131363IPR001005SANT/Myb domain
PfamPF002498.0E-161461IPR001005SANT/Myb domain
CDDcd001671.34E-111761No hitNo description
Gene3DG3DSA:1.10.10.605.0E-2365117IPR009057Homeodomain-like
SMARTSM007171.1E-1066114IPR001005SANT/Myb domain
PROSITE profilePS5129416.85666116IPR017930Myb domain
PfamPF002496.8E-1167109IPR001005SANT/Myb domain
CDDcd001676.27E-870109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGRRSCGYKQ KLRKGLWSPD EDEKLLRYIT KHGHGCWSSV PKLAGLERCG KSCRLRWINY  60
LRPDLKRGGF SSQEENLIIQ LQSVLGNRWS QIAARLPGRT DNEIKNLWNS SIKKKLMQKG  120
VDPNTHKPLS EVMLSTSTCP EKASRELDTA ISLNLKEDSS KPSLVDVSSC RTEKGDDNLT  180
ASKTSAHQEF FPNKSFPINR YPSIQQRPLD SIACLQFPVQ NLSHDQLKLD QKCILFEPNK  240
EFNSRTPVPT FSRSILSAQT DNKIYAGLPF HPMGTFNNIH WDSSNCSGNK SFFDSNVFSW  300
GLADGGGSSD KTLQLHSADA ETTDIKWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0264s0440.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466908.10.0transcription factor MYB8
TrEMBLA0A2I4KKU70.0A0A2I4KKU7_POPTR; MYB family protein
STRINGPOPTR_0010s00690.11e-111(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2810633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.12e-84myb domain protein 50