PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0266s0300.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

WOX

Protein Properties

Length: 218aa MW: 24743.8 Da PI: 5.3728

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0266s0300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.5	1.5e-20	77	137	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++ qle+Le+ F++ n +p ++++ +++k+l +++e++V++WFqNrRa+ k+ SapurV1A.0266s0300.1.p 77 RQRWTPKPAQLEILEQIFKQcNATPGRQKINDITKELaqhgQISETNVYNWFQNRRARSKR 137 89***************99************************************97 PP
2	Wus_type_Homeobox	95.6	4.1e-31	76	139	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+p Q++iLe+++k+ tP +++i++it+eL+++G+i+++NV++WFQNr+aR+++kq SapurV1A.0266s0300.1.p 76 SRQRWTPKPAQLEILEQIFKQCNATPGRQKINDITKELAQHGQISETNVYNWFQNRRARSKRKQ 139 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.8E-17	69	140	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.6E-17	70	140	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.625	73	138	IPR001356	Homeobox domain
SMART	SM00389	5.1E-13	75	142	IPR001356	Homeobox domain
Pfam	PF00046	3.5E-18	77	137	IPR001356	Homeobox domain
CDD	cd00086	6.76E-14	77	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MEDGKFQNGG GLGVKVMTDE QMEMLRKQIS VYATICEQLV EMHKALSAQQ DFAGMRLGNP 60 YFCDPLLSSS VHKIGSRQRW TPKPAQLEIL EQIFKQCNAT PGRQKINDIT KELAQHGQIS 120 ETNVYNWFQN RRARSKRKQS AILPNSGESE VETEIESFKE KKTKPEDSQP DEEDATPVSD 180 HMHFHSPDIG IDQFVGKMES PGSCIPYWQM EQYDLFG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	138	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0266s0300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF982713	0.0	KF982713.1 Populus tomentosa WOX13b (WOX13b) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011041212.1	1e-156	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	6e-69	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A1L6K4D4	1e-155	A0A1L6K4D4_POPTO; WUSCHEL-related homeobox 13
STRING	POPTR_0005s27410.1	1e-154	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-65	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	SapurV1A.0266s0300.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]