PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0266s0390.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Nin-like
Protein Properties Length: 920aa    MW: 101827 Da    PI: 6.7409
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0266s0390.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.43.4e-29612662252
                  RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                             ek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  SapurV1A.0266s0390.1.p 612 EKTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 662
                             89***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.587601682IPR003035RWP-RK domain
PfamPF020421.7E-25614662IPR003035RWP-RK domain
SuperFamilySSF542774.66E-21818914No hitNo description
PROSITE profilePS5174522.645828911IPR000270PB1 domain
SMARTSM006669.5E-22828911IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2402.4E-20829908No hitNo description
PfamPF005641.8E-15829910IPR000270PB1 domain
CDDcd064074.92E-35829908No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 920 aa     Download sequence    Send to blast
MMEDGVLSPG MVLGAAVNSA MDFDYMDELL LDGCWLETAD GSEILNPNLS NSAAFFDTSF  60
MWPSPEIKNG NPASSLSQKG RQEANRVPFL PGNSPLSDIQ SRSPVGEIAV SAAGWEYNST  120
EGSELGRRWW IGPAPNPSPG TTVKRRLIMA VECIIDLTKN KDALIQIWVP VNRGGRRVLT  180
THDQPFALDP SCERLASYRD ISVKYQFSAE EDSKDSVGMP GRVFLGKVPE WTPDVRFFRY  240
DEYARVNHAQ LYDVRGTLAL PVFEQGSKTC LGVVEVVTTS QKINYLPELE SVCKALEAVD  300
LRCTEVPSIQ NLKACDVSYQ AALPDIQKVL RAACETHRLP LAQTWVSCIQ QGKGGCWHSN  360
ENYYHCVSTV YDACCVGDPA FQGFLEACSE HHLLKGQGFV GEAFMTNQPC FSGDVTLYGK  420
TEYPLSHLAR IFGLCAAVAI RLRSMYTGTT DFVLEFFLPV DCRDPQEQKT MLASLSNIIQ  480
RVCQTLRVVT VKELEEETDL PVSEVLVHSG GRSSGEETST VEESYSERNS RVNSPWTACL  540
PKVQQSGSNT SLSEKDKEKV MSCEESIESR HNQEGYSLKG SIKYGRNSTS AEGSFSSVCR  600
TKPREKRRAK SEKTITLQVL RQYFAGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIK  660
KVGHSLQKLQ RVIDSVEGAP ASVQICSFYK NFPELASPNS SRNSPLSTLN PSSPSGMQIE  720
GGTFRSQVSA PKSPSPSCSL SSSSSHSYSS TTQQHPSAIT AAASEHPRLG ENLGSGVLKV  780
RSNAELHASI LEEQKLMPRS QSHTTLSELG NRPPVPKDSS RLSQEMDGHR VKVSFRNEKI  840
RLRIPYKWLF KDLLQEIIRR FNIDVIHRYD LKYLDDDSEW VLLTCDDDFE ECIDVCGSGD  900
NQTIKLLLEV SPHPSGRSL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0266s0390.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041223.10.0PREDICTED: protein NLP4-like
RefseqXP_011041224.10.0PREDICTED: protein NLP4-like
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLA0A2K2AMD30.0A0A2K2AMD3_POPTR; Uncharacterized protein
TrEMBLA0A385JI310.0A0A385JI31_POPTO; NIN-like protein 1
STRINGPOPTR_0005s27310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein