PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0266s0390.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Nin-like
Protein Properties Length: 910aa    MW: 100810 Da    PI: 6.91
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0266s0390.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.43.4e-29602652252
                  RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                             ek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  SapurV1A.0266s0390.2.p 602 EKTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 652
                             89***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.587591672IPR003035RWP-RK domain
PfamPF020421.7E-25604652IPR003035RWP-RK domain
SuperFamilySSF542774.66E-21808904No hitNo description
PROSITE profilePS5174522.645818901IPR000270PB1 domain
SMARTSM006669.5E-22818901IPR000270PB1 domain
PfamPF005641.8E-15819900IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2402.4E-20819898No hitNo description
CDDcd064075.21E-35819898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    Send to blast
MVLGAAVNSA MDFDYMDELL LDGCWLETAD GSEILNPNLS NSAAFFDTSF MWPSPEIKNG  60
NPASSLSQKG RQEANRVPFL PGNSPLSDIQ SRSPVGEIAV SAAGWEYNST EGSELGRRWW  120
IGPAPNPSPG TTVKRRLIMA VECIIDLTKN KDALIQIWVP VNRGGRRVLT THDQPFALDP  180
SCERLASYRD ISVKYQFSAE EDSKDSVGMP GRVFLGKVPE WTPDVRFFRY DEYARVNHAQ  240
LYDVRGTLAL PVFEQGSKTC LGVVEVVTTS QKINYLPELE SVCKALEAVD LRCTEVPSIQ  300
NLKACDVSYQ AALPDIQKVL RAACETHRLP LAQTWVSCIQ QGKGGCWHSN ENYYHCVSTV  360
YDACCVGDPA FQGFLEACSE HHLLKGQGFV GEAFMTNQPC FSGDVTLYGK TEYPLSHLAR  420
IFGLCAAVAI RLRSMYTGTT DFVLEFFLPV DCRDPQEQKT MLASLSNIIQ RVCQTLRVVT  480
VKELEEETDL PVSEVLVHSG GRSSGEETST VEESYSERNS RVNSPWTACL PKVQQSGSNT  540
SLSEKDKEKV MSCEESIESR HNQEGYSLKG SIKYGRNSTS AEGSFSSVCR TKPREKRRAK  600
SEKTITLQVL RQYFAGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIK KVGHSLQKLQ  660
RVIDSVEGAP ASVQICSFYK NFPELASPNS SRNSPLSTLN PSSPSGMQIE GGTFRSQVSA  720
PKSPSPSCSL SSSSSHSYSS TTQQHPSAIT AAASEHPRLG ENLGSGVLKV RSNAELHASI  780
LEEQKLMPRS QSHTTLSELG NRPPVPKDSS RLSQEMDGHR VKVSFRNEKI RLRIPYKWLF  840
KDLLQEIIRR FNIDVIHRYD LKYLDDDSEW VLLTCDDDFE ECIDVCGSGD NQTIKLLLEV  900
SPHPSGRSL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0266s0390.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041223.10.0PREDICTED: protein NLP4-like
RefseqXP_011041224.10.0PREDICTED: protein NLP4-like
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLA0A2K2AMD30.0A0A2K2AMD3_POPTR; Uncharacterized protein
TrEMBLA0A385JI310.0A0A385JI31_POPTO; NIN-like protein 1
STRINGPOPTR_0005s27310.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein