PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0267s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Dof
Protein Properties Length: 297aa    MW: 33366.1 Da    PI: 4.7884
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0267s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1177.6e-373087562
                  zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                            a +cprC s ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk ++++
  SapurV1A.0267s0010.1.p 30 APNCPRCASPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKYRRAK 87
                            568**************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-291985IPR003851Zinc finger, Dof-type
PfamPF027013.3E-313185IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.1833185IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103369IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MYSAGDHMMI QCPPRPSTVE RKWKSNVDVA PNCPRCASPN TKFCYYNNYS LSQPRYFCKG  60
CRRYWTKGGS LRNVPVGGGC RKYRRAKSSK ISQDERGCGR ADETSACSSD KDSMAQQGGA  120
TIGSDIDLAA VFSKFLKQNL SHGPESIDGE LRDEGSEMDN ISSSSTPISD SYQNDPMMES  180
LKRSDLTQES NLLEGRSQLL VGEKPRFEEE RIQELMESQD MNAFGLQNLL IDEIVQDAWW  240
SDDANLPDVP NWQPMVQLRG FDSFSVDERL KISANFISDN NWRSFDLSGL EVFPRP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183ESLKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0267s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2227461e-145CU222746.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027360.10.0PREDICTED: dof zinc finger protein DOF1.2
RefseqXP_011042819.10.0PREDICTED: dof zinc finger protein DOF1.2-like
TrEMBLA0A3Q9EE431e-180A0A3Q9EE43_POPTO; Dof-type zinc finger DNA-binding family protein
STRINGPOPTR_0002s07150.11e-171(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18173394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.14e-41Dof family protein