PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0270s0250.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

LBD

Protein Properties

Length: 148aa MW: 16910.7 Da PI: 5.0025

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0270s0250.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	23.9	1.2e-07	3	59	44	100
DUF260 44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++l++l ++r + ++s+++eA ++ +d ++G +g +++l +q+k e +ll+++ SapurV1A.0270s0250.1.p 3 RMLRNLGVQDRANSVESIIWEATCWSKDSINGPLGCLKRLVDSERQAKLENQLLRKQ 59 799999************************************999999999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.4E-5	3	55	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MERMLRNLGV QDRANSVESI IWEATCWSKD SINGPLGCLK RLVDSERQAK LENQLLRKQL 60 YSLSRSGRSA QIDEKQQNQT NEQMLNMEGS ASDQVYATPD SDIARNYYFD SEEGLELHWQ 120 GNIYTRYGSV NPQEIRGRKN FTDNASI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0270s0250.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K1YGB5	8e-74	A0A2K1YGB5_POPTR; Uncharacterized protein (Fragment)
STRING	POPTR_0011s06000.1	2e-73	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF28066	3	3

Link Out ? help Back to Top
Phytozome	SapurV1A.0270s0250.1.p