PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0271s0160.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 170aa MW: 18353.2 Da PI: 8.128

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0271s0160.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00042	44	64	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C++C + F ++ L H++ SapurV1A.0271s0160.1.p 44 FSCNYCQRKFYSSQALGGHQN 64 89***********99988886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.286	44	71	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MDFQPNTSLH PSLPSNQLNL ELVLEPSSSS SSSSPHSPAE PRVFSCNYCQ RKFYSSQALG 60 GHQNAQKLER TLAKKSREMS SSVRAHGGSN ARSGSSSCMS GSSFPRHHDP ALARFEHHGH 120 AGRFVGDASY GRTERNYGSI EGVGGSWSMG YIAENVQEEL SPLDLSLRL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269\|PubMed:18192438}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0271s0160.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024446546.1	1e-95	zinc finger protein 7
Swissprot	Q39261	2e-30	ZFP2_ARATH; Zinc finger protein 2
TrEMBL	A0A2K1WYG7	3e-94	A0A2K1WYG7_POPTR; Uncharacterized protein
STRING	POPTR_0006s18540.1	2e-69	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9619	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	3e-30	zinc finger protein 2

Link Out ? help Back to Top
Phytozome	SapurV1A.0271s0160.1.p