PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0271s0190.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 499aa MW: 55763.8 Da PI: 5.0841

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0271s0190.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	142.7	2.1e-44	44	169	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 ppG+rF+P+d+el+ +yL +k+++++l+ + i+ev +y+++P++L + +ekewyf ++rd+ky++g+r+nra+ +gyWkatg SapurV1A.0271s0190.1.p 44 PPGYRFKPKDQELILYYLLNKIKNRPLPS-NGIHEVTLYRYNPETLTgNYEPYGEKEWYFLTPRDRKYPKGDRPNRAAGDGYWKATG 129 9*************************9.77**********9444445899*************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+v+ ++++g kktLvfy+g++p g+kt+W+m eyr+ SapurV1A.0271s0190.1.p 130 ADKDVIY-ARQVIGSKKTLVFYRGKSPGGVKTNWIMREYRA 169 ***.8999*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-54	41	196	IPR003441	NAC domain
PROSITE profile	PS51005	51.681	43	196	IPR003441	NAC domain
Pfam	PF02365	1.7E-23	44	168	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MEDQRRGAGL TNPVNNSSTT CPSQAQPAVN PGQFAERGQE DKYPPGYRFK PKDQELILYY 60 LLNKIKNRPL PSNGIHEVTL YRYNPETLTG NYEPYGEKEW YFLTPRDRKY PKGDRPNRAA 120 GDGYWKATGA DKDVIYARQV IGSKKTLVFY RGKSPGGVKT NWIMREYRAS NSDGAPQRAN 180 NTMRLDDWVL CRIHNKKDSF PRSRMNGLLD DENEDQPLEN NGNLAPHQVV VPDISGNHNP 240 GDSANHQNSQ NGLVAGVSNV LAVADNTPYA NYAYAYPQNS QDGLVARVSQ YHEVTSVPTM 300 AGNYNIESQM GYLGRYGNFS SVYPQNSQNE LVGGVSQYHE VTGVSTVTRD YNIESQMGYL 360 GRYGNFSSVY PQNSQNELVG GVSQYHEVTG VSTVTRDYNL ESQMGYLGRY GDSASAYPQN 420 YQNRMTGVSQ YNAFPGIPQT TDLQPEQTSN YVQKTLLDHE LSSSQMDGED SYDFGENDDY 480 LFGLDSDVTF STSSDDHH*

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MEDQRRGAGL TNPVNNSSTT CPSQAQPAVN PGQFAERGQE DKYPPGYRFK PKDQELILYY  60
LLNKIKNRPL PSNGIHEVTL YRYNPETLTG NYEPYGEKEW YFLTPRDRKY PKGDRPNRAA  120
GDGYWKATGA DKDVIYARQV IGSKKTLVFY RGKSPGGVKT NWIMREYRAS NSDGAPQRAN  180
NTMRLDDWVL CRIHNKKDSF PRSRMNGLLD DENEDQPLEN NGNLAPHQVV VPDISGNHNP  240
GDSANHQNSQ NGLVAGVSNV LAVADNTPYA NYAYAYPQNS QDGLVARVSQ YHEVTSVPTM  300
AGNYNIESQM GYLGRYGNFS SVYPQNSQNE LVGGVSQYHE VTGVSTVTRD YNIESQMGYL  360
GRYGNFSSVY PQNSQNELVG GVSQYHEVTG VSTVTRDYNL ESQMGYLGRY GDSASAYPQN  420
YQNRMTGVSQ YNAFPGIPQT TDLQPEQTSN YVQKTLLDHE LSSSQMDGED SYDFGENDDY  480
LFGLDSDVTF STSSDDHH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-50	44	199	18	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-50	44	199	18	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-50	44	199	18	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-50	44	199	18	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-50	44	199	21	171	NAC domain-containing protein 19
3swm_B	1e-50	44	199	21	171	NAC domain-containing protein 19
3swm_C	1e-50	44	199	21	171	NAC domain-containing protein 19
3swm_D	1e-50	44	199	21	171	NAC domain-containing protein 19
3swp_A	1e-50	44	199	21	171	NAC domain-containing protein 19
3swp_B	1e-50	44	199	21	171	NAC domain-containing protein 19
3swp_C	1e-50	44	199	21	171	NAC domain-containing protein 19
3swp_D	1e-50	44	199	21	171	NAC domain-containing protein 19
4dul_A	1e-50	44	199	18	168	NAC domain-containing protein 19
4dul_B	1e-50	44	199	18	168	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0271s0190.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002325069.1	0.0	NAC transcription factor 25
TrEMBL	B9IM14	0.0	B9IM14_POPTR; Uncharacterized protein
STRING	POPTR_0018s10310.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF28096	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	4e-62	NAC domain containing protein 32

Link Out ? help Back to Top
Phytozome	SapurV1A.0271s0190.1.p