PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0272s0170.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 382aa    MW: 42225.5 Da    PI: 6.5037
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0272s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17267301135
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  SapurV1A.0272s0170.1.p 267 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 301
                             99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.5E-7533357IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.374261297IPR000679Zinc finger, GATA-type
SMARTSM004017.9E-18261311IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-15262325No hitNo description
Gene3DG3DSA:3.30.50.101.0E-14262298IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.97E-14266313No hitNo description
PROSITE patternPS003440267292IPR000679Zinc finger, GATA-type
PfamPF003201.4E-15267301IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEAPELYGTT GFCSSQFTSN EKHHSFDSNK SIGGGVAGGD HFIVEDLLDF SNEDEDAMMT  60
DPNYNNNIVT PTTNSTDSST ATFVDSCNSS SFSGCEPSGF NGDIGSHYTN NFSHHDVHFG  120
SELCVPYDDL AELEWVSNFV EESFSSEDLQ RLQLITGMKA RPDESSETRH FQTDDNNNGY  180
VSNICSNNTM FNPEMAVPAK ARSKRSRAAP GNWASRLLVL SPATSSSEPE IIPGSTQHPN  240
SGKKTIKGAA GLKKRDGGVE GGEGRKCLHC ATDKTPQWRT GPMGPKTLCN ACGVRYKSGR  300
LVPEYRPAAS PTFMLTKHSN SHRKVLELRR QKEMVRTHQH QHQHQHQQFL HHHQNMMFDL  360
SNGGDDYLIH QHAGPDFRQM I*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0272s0170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460548.10.0GATA transcription factor 12
SwissprotP697812e-93GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2I4KKR00.0A0A2I4KKR0_POPTR; GATA transcription factor
STRINGPOPTR_0006s25410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.15e-77GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]